Locus 7685

Sequence ID 3R_DroMel_CAF1
Location 20,613,689 – 20,613,782
Length 93
Max. P 0.570056
window12396

overview

Window 6

Location 20,613,689 – 20,613,782
Length 93
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 79.50
Mean single sequence MFE -41.63
Consensus MFE -24.08
Energy contribution -25.53
Covariance contribution 1.45
Combinations/Pair 1.29
Mean z-score -1.69
Structure conservation index 0.58
SVM decision value 0.07
SVM RNA-class probability 0.570056
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20613689 93 - 27905053
GGUCGAGGGCACCUGGAUAGGAUGCCAGGCAAUGCGGCCGGAGU-CACCGUUCGGGGGUUGAUGCUCCUGAAAGCUGGCCAGGAUG-CACUACGC
...((.((((((((((.((((((.((.(((......))))).))-)....(((((((((....)))))))))..))).))))).))-).)).)). ( -37.90)
>DroSec_CAF1 2586 93 - 1
GGUGGAGGGCACCUGGCCAGGAUGCCAGGCAGUACGGCCGGAGU-CACCGUUCGGGGGUUGCUGCUCCUGGUAGCUAGCCAGGAUG-CAUUGCGC
.(((.((.(((((((((.((..(((((((.((((((((((....-).((....)).))))).))))))))))).)).)))))).))-).)).))) ( -42.70)
>DroSim_CAF1 2587 92 - 1
GGUGGAGGGCACCUGGCCAGGAUGCCAGGCAAAUCGGCCGGAGU--ACCGUUCGGGGGUUGCUGCUCCUGGAAGCUAGCCAGGAUG-CACUGCGC
.(((.((.((((((((((((((.((..(((((.(((..(((...--.)))..)))...)))))))))))).......)))))).))-).)).))) ( -41.61)
>DroEre_CAF1 2566 93 - 1
GGUCGAGGGCACCUGGUCAGGAUGACAGGCAAUGCGGCCGGAGU-CACCUUUCGGGGGUUGAUGCUCCUGGAAGCUGGCCAGGAUG-CACUGCGC
...((.((((((((((((((..((((.(((......)))...))-)).(((((((((((....)))))))))))))))))))).))-).)).)). ( -45.90)
>DroYak_CAF1 2583 93 - 1
GGUCGAGGGCACCUGGCCAGGAUGCCAGCCACUGCGGCCGAAGU-CACCUUUCGGGGGUUGUUGCUCCUGGAAGCUGGCCAGGAUG-CACUGCGC
...((.(((((((((((((((((..(.(((.....))).)..))-)..(((((((((((....)))))))))))))))))))).))-).)).)). ( -47.40)
>DroAna_CAF1 2638 85 - 1
GCUGAAGUUCACCUGGCCAGGAC----------CUGUCUGGAGUUCAAUCUGAGGGGGUGGCUGUGCCAGGAUGCUGGGUGGGUGGACAAUGCGC
((....(((((((((.((((..(----------((.((.(((......))))).))).((((...)))).....)))).)))))))))...)).. ( -34.30)
>consensus
GGUCGAGGGCACCUGGCCAGGAUGCCAGGCAAUGCGGCCGGAGU_CACCGUUCGGGGGUUGCUGCUCCUGGAAGCUGGCCAGGAUG_CACUGCGC
...........(((((((((.......(((......)))...........(((((((((....)))))))))..)))))))))............ (-24.08 = -25.53 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:57 2006