Locus 7684

Sequence ID 3R_DroMel_CAF1
Location 20,607,635 – 20,607,739
Length 104
Max. P 0.824668
window12395

overview

Window 5

Location 20,607,635 – 20,607,739
Length 104
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -38.42
Consensus MFE -26.86
Energy contribution -26.20
Covariance contribution -0.66
Combinations/Pair 1.30
Mean z-score -1.88
Structure conservation index 0.70
SVM decision value 0.69
SVM RNA-class probability 0.824668
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20607635 104 + 27905053
UCAUAAAGGAGGACAAGGCGGGCUUCUCCAACCGGGUGAAACCCAUCAAGCCACAGGUGGAGGUUAGUCCCUCGUCACUUAGCGGCUUCCAUCGACCCACC---AAC
.......((.((....(..(((.(((.((.....)).))).)))..)(((((.((((((((((......))))..))))).).)))))........)).))---... ( -31.50)
>DroPse_CAF1 35133 104 + 1
UCAUCAAGGAGGAGAAGGCUGGCUUCUCCAAUCGCGUGAAGCCAGUCAGGCCUCAGGUGGAGGUCAGUGCCAAUUCGGCCAGUGGCUUCCAUCGCCCCAGC---AGU
........((((....((((((((((.((....).).))))))))))...)))).(((((((((((.((((.....)).)).)))))))))))((....))---... ( -47.40)
>DroEre_CAF1 33004 104 + 1
UCAUAAAGGAGGACAAGGCGGGCUUCUCCAACCGCGUGAAGCCCAUCAAGCCGCAGGUGGAACUCAGUCCCUCCUCAGUCAGCGGCUUCCAUCGACCCACC---AGC
.......((.((....(..(((((((.((....).).)))))))..)((((((((((.(((......)))..)))......)))))))........)).))---... ( -33.80)
>DroYak_CAF1 32820 107 + 1
UCAUCAAGGAGGACAAGGCGGGCUUCUCCAACCGGGUGAAGCCCAUCAAGCCGCAGGUGGAGGUCAGUCCCUCCUCAGUCAGCGGCUUCCAUCGACCCACCCACAAC
.......((.((....(..(((((((.((.....)).)))))))..)(((((((..(.(((((......))))).).....)))))))........)).))...... ( -41.10)
>DroAna_CAF1 34136 104 + 1
UAGUCAAGGAGGACAAGGCGGGUUUCUCGAACCGAGUGAAGCCUGCAAAGCCUCACGUUGAGCUCAUUCCGAAUUCUGUCUCCGGCUUCAAUCGACCUACU---AAU
((((..((((((.....(((((((((.(.......).)))))))))....))))..(((((.......(((...........)))......))))))))))---).. ( -29.32)
>DroPer_CAF1 36115 104 + 1
UCAUCAAGGAGGAGAAGGCUGGCUUCUCCAAUCGCGUGAAGCCAGUCAGGCCUCAGGUGGAGGUCAGUGCCAAUUCGGCCAGUGGCUUCCAUCGCCCCAGC---AGU
........((((....((((((((((.((....).).))))))))))...)))).(((((((((((.((((.....)).)).)))))))))))((....))---... ( -47.40)
>consensus
UCAUCAAGGAGGACAAGGCGGGCUUCUCCAACCGCGUGAAGCCCAUCAAGCCUCAGGUGGAGGUCAGUCCCAAUUCAGUCAGCGGCUUCCAUCGACCCACC___AAC
..........((....((((((((((.(.......).))))))).....)))...((((((((((..................))))))))))...))......... (-26.86 = -26.20 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:56 2006