Locus 7683

Sequence ID 3R_DroMel_CAF1
Location 20,605,549 – 20,605,648
Length 99
Max. P 0.535126
window12394

overview

Window 4

Location 20,605,549 – 20,605,648
Length 99
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 80.50
Mean single sequence MFE -28.22
Consensus MFE -21.10
Energy contribution -22.10
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.10
Structure conservation index 0.75
SVM decision value 0.00
SVM RNA-class probability 0.535126
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20605549 99 + 27905053
CCGUCUGCAUC-AUUC------GACUCGAUCUCUUUACUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACACGCAGCGAAUCUCGCUGCGACGU
.(((((((.((-((.(------((.((((.........))))..((.....))...)))))))(((((....))))).)))...((((((.....)))))))))). ( -34.30)
>DroPse_CAF1 33045 90 + 1
-U--CUCUUUCCGUCU------GCCUCUAU-------CUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACGCCCAGAAGAUCUCCCUGCGCCGC
-.--.(((((..((.(------((.....(-------(((((..((.....))...)))).))(((((....))))).))).))...))))).............. ( -18.40)
>DroSec_CAF1 30117 99 + 1
CCGUCUGCAUC-AUUG------GCCUCGAUCUCUUUACUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACACGCAGCGAAUCUCGCUGCGCCGG
(((..(((...-((((------((.((((.........))))......(((((.((....)).)))))...)))))).)))..(((((((.....))))))).))) ( -33.70)
>DroEre_CAF1 30919 105 + 1
CUGUCCGCCUC-AUUCGACACUGCCUCGAUCUCUUUACUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACACGCAGCGCAUCUCGCUGCGGCGC
.....((((..-...((((.(((..((((.........)))))))...(((((.((....)).))))).......)))).....((((((.....)))))))))). ( -32.50)
>DroYak_CAF1 30746 93 + 1
------GCAUC-AUUC------GCCUCGAUCUCUUUCAUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACACGCAGCGCAUCUCGCUGCGUCGC
------((...-....------((...........(((((((..((.....))...)))))))(((((....))))).))..((((((((.....)))))))).)) ( -32.00)
>DroPer_CAF1 34027 90 + 1
-U--CUCUUUCCGUCU------GCCUCUAU-------CUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACGCCCAGAAGAUCUCCCUGCGCCGC
-.--.(((((..((.(------((.....(-------(((((..((.....))...)))).))(((((....))))).))).))...))))).............. ( -18.40)
>consensus
_U__CUGCAUC_AUUC______GCCUCGAUCUCUUUACUCGACAGCUUCCAGCACAUCGAUGAGCUGGCCCGCCAGUCGCACACGCAGCGAAUCUCGCUGCGCCGC
.......................................((((.((..(((((.((....)).)))))...))..))))....(((((((.....))))))).... (-21.10 = -22.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:55 2006