Locus 7682

Sequence ID 3R_DroMel_CAF1
Location 20,601,557 – 20,601,663
Length 106
Max. P 0.942470
window12393

overview

Window 3

Location 20,601,557 – 20,601,663
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 75.91
Mean single sequence MFE -31.08
Consensus MFE -21.19
Energy contribution -20.30
Covariance contribution -0.89
Combinations/Pair 1.38
Mean z-score -1.73
Structure conservation index 0.68
SVM decision value 1.33
SVM RNA-class probability 0.942470
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20601557 106 - 27905053
AGUGGCACUGGAGAAGAAGUACCCACCAUUGCGCAGCAUCUCCGGCUGAAUCCGACCGUACAGCUCGGUCAUGGCAUCGAGACCCUGUCGCACACUCUGCUGCAAG
.(..(((.(((.(........))))....(((((((..((((..((((...((((.(.....).))))...))))...))))..))).)))).....)))..)... ( -30.60)
>DroPse_CAF1 27974 98 - 1
ACUACC--------ACACAUACACACCAUUUCGCAGCAUCUCCGGCUGGAUGCGGCCAUAAAGCUCGGCCAUGGCGUCCAGUCCUUGCCGCACGCUCUGCUGCAAU
......--------..................((((((.....((((((((((((((.........))))...))))))))))...((.....))..))))))... ( -33.70)
>DroEre_CAF1 26876 100 - 1
AGU------GGAGAAGAAGUACCCACCAUUGCGCAGCAUCUCCGGCUGAAUCCGACCAUACAGCUCGGUCAUGGCAUCCAGACCCUGUCGCACACUCUGCUGCAAG
.((------((.(........)))))......((((((.....(((((.((......)).))))).((((.(((...))))))).............))))))... ( -25.60)
>DroWil_CAF1 34217 101 - 1
AAUAUC--UA---UACACAUACACACCAUUGCGCAGCAUUUGUGGCUGUAUUUUGCCAUAUAGCUCGGUCAUGGCAUCCAAUCCUUGUCGUACACUUUGCUGCAAA
......--..---...................((((((...((((((((((......)))))))......((((((.........)))))).)))..))))))... ( -25.30)
>DroMoj_CAF1 31163 97 - 1
AGUAGC---------AUAGCGCACACCAUUAAGCAGCAUUUGAGGCUGGAUCCUGCCGUAGAGGUCGGCCAUGGCAUUGAGUCCUUGCUGCACGCUCUGCUGCAGC
.(((((---------(.((((...........((((((...(.((((.(((((.((((.......))))...)).))).))))).)))))).)))).))))))... ( -37.60)
>DroPer_CAF1 27923 98 - 1
ACUACC--------ACACAUACACACCAUUUCGCAGCAUCUCCGGCUGGAUGCGGCCAUAAAGCUCGGCCAUGGCGUCCAGUCCUUGCCGCACGCUCUGCUGCAAU
......--------..................((((((.....((((((((((((((.........))))...))))))))))...((.....))..))))))... ( -33.70)
>consensus
AGUACC________ACAAAUACACACCAUUGCGCAGCAUCUCCGGCUGGAUCCGGCCAUAAAGCUCGGCCAUGGCAUCCAGUCCUUGCCGCACACUCUGCUGCAAG
................................((((((......((.......((((.........))))..((((.........))))))......))))))... (-21.19 = -20.30 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:54 2006