Locus 7678

Sequence ID 3R_DroMel_CAF1
Location 20,584,728 – 20,584,848
Length 120
Max. P 0.629154
window12385

overview

Window 5

Location 20,584,728 – 20,584,848
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.00
Mean single sequence MFE -37.59
Consensus MFE -20.52
Energy contribution -22.25
Covariance contribution 1.73
Combinations/Pair 1.48
Mean z-score -1.52
Structure conservation index 0.55
SVM decision value 0.20
SVM RNA-class probability 0.629154
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20584728 120 + 27905053
UCGCUGUGCUAUGCUAAAGGCGAGACAGGAUUACCAAUUAAUCCAAUCCUCUGUGAUCCUGGUGCAGCGCAAAUUCCGUGCUAAUCGCAGCAUGAAGCAGGCACGCCAGGAAUUUGUCCA
..((((..(..(((.....)))...(((((((((..................))))))))))..))))((((((((((((((......)))))......((....)).)))))))))... ( -41.37)
>DroPse_CAF1 9636 120 + 1
CCGUCAGUCCAUGCAUACAGUCCGCGUGGAGUAUAAGCUCCUUCAGUCGACUACCAUUCGCCUACAGCGCAAGUUCCGAGCCACACGCAUCAUGCACAAAGUGCGCCACGAUUUUGUCCA
.(((......((((....((((.((..(((((....)))))....)).)))).......((....(((....)))....)).....))))...((((...))))...))).......... ( -25.70)
>DroGri_CAF1 9729 120 + 1
CCGACAAACAAUGCUCGUGGCAAGGGCACACUAUCAGCAGCUGCAGUCGGUCACCAUUUGGAUGCAACGUAAAUUUCGAGCUACACGCAGCAUGCGCCAGAAGCGCAGCGAAUUUCUGCA
............(((..((((.((......))....((((((((.((.(.((.((....)).(((...)))......)).).))..))))).)))))))..)))((((.......)))). ( -31.50)
>DroSim_CAF1 9627 120 + 1
UCGCUGUGCCAUGCUAAAGGCGAGACAGGAUUAUCAAUUAAUCCAAUCCUCUGUGAUCCUGGUGCAGCGCAAAUUCCGUGCUAAUCGCAGCAUGAAGCAGGCACGCCAGGAAUUUGUCCA
..((((..(((.((.....))(((...((((((.....))))))....)))........)))..))))((((((((((((((......)))))......((....)).)))))))))... ( -42.30)
>DroEre_CAF1 9236 120 + 1
CCGCUGUGCCAUGCUAAAGGCGAGACGGGAUUACCAAUUAAUUCUAUCCUCUGUGAUCCUGGUGCAGCGCAAAUUCCGUGCUAAUCGCUGCAUGAAGCAGGCACGCCACGAAUUUGUCCA
..((((..((.(((.....)))....((((((((..................))))))))))..))))((((((((((((((....(((......))).))))))....))))))))... ( -40.87)
>DroYak_CAF1 9198 120 + 1
CCGCUGUGCCAUGCUAAAGGCGAGACAGGAUUACCAAUUAAUCCAGUCCUCUGUGAUCCUGGUGCAGCGCAAAUUCCGUGCUAAUCGCUGCAUCAAGCAGGCACGCCAGGAGUUUGUCCA
..((((..(((.((.....))(((((.((((((.....)))))).)).)))........)))..))))((((((((((((((....(((......))).)))))....)))))))))... ( -43.80)
>consensus
CCGCUGUGCCAUGCUAAAGGCGAGACAGGAUUACCAAUUAAUCCAAUCCUCUGUGAUCCUGGUGCAGCGCAAAUUCCGUGCUAAUCGCAGCAUGAAGCAGGCACGCCACGAAUUUGUCCA
..(((((((..(((.....)))...(((((((((..................))))))))))))))))((((((((((((((.................))))))....))))))))... (-20.52 = -22.25 +   1.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:47 2006