| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,584,134 – 20,584,253 |
| Length | 119 |
| Max. P | 0.680831 |
| Location | 20,584,134 – 20,584,253 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.68 |
| Mean single sequence MFE | -41.72 |
| Consensus MFE | -27.83 |
| Energy contribution | -26.17 |
| Covariance contribution | -1.66 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.680831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20584134 119 + 27905053 GAGCUGCCUGCAGAUGCAUUGGCGUAAUCAUCUCCUUAGGAAACGGGAGAGGAACAGUUUCUUACAACUGCGUCAAGCAGCAAUAACACUGCAGCGACGGUACCGAGCUCGUCUGAAUA (((((((.(((((.(((.((((((...((.((((((..(....))))))).)).(((((......))))))))))))))(......).)))))))..((....)))))))......... ( -40.30) >DroPse_CAF1 9042 119 + 1 CAGCUGCCUGCAGAUGCACUGGCGGGCACAUCUCUUGAAAAAGCGAGAGCGAAGCCGUUUCCUCUCACUGCGUCAGGCAGCCAUCACCCUGCAGCGGCGUUACAGAGCCCGUUUGGUCA ..(((((((...((((((.(((.(((....((.(((....))).))(((((....)))))))).))).)))))))))))))....(((..((.(.(((........))))))..))).. ( -39.90) >DroSec_CAF1 8647 119 + 1 AAGCUGCCUGCAGAUGCACUGGCGUAGUCAUCUGCUUAGAAAACGGCAGCGGAACAGUUUCUUACAACUGCGUCAAGCAGCUAUAACGCUGCAACGACGGUACCGAGCUCGUCUGAGCA ..((((((.(((((((.((((...)))))))))))...(....)))))))((..(((((......)))))((((..(((((......)))))...))))...))..((((....)))). ( -46.30) >DroEre_CAF1 8642 119 + 1 UAGCUGUCUGCAGAAGCAUUGGCGUAGUCAUCUCCUCAGGAAACGGGAGCGAAACAGUUUCCUACAACAGCGCCAAGCAGCUAUAACACUGCAGCGACGCUACCGAGCUCGUCUGACUA (((((((.(((....)))(((((((.((..........(....)((((((......))))))....)).))))))))))))))........((((((.(((....)))))).))).... ( -40.00) >DroYak_CAF1 8604 119 + 1 CAGCUGCCUGCAGAUGCAUUGGCGCAAUCAUCUGCUCAGGAAACGGGAGCGAAACAGUUUCCUACAACUGCGCCAAGCAGCUAUAACACUGCAGCGACGGUACCGCGCUCGUCUGACCA .((((((.(((....)))((((((((............(....)((((((......))))))......))))))))))))))....((..((((((.((....)))))).)).)).... ( -43.10) >DroPer_CAF1 9023 119 + 1 CAGCUGCCUGCAGAUGCACUGGCGGGCACAUCUCUUGAAAAAGCGAGAGCGAAGCCGUUUCCUAUCACUGCGUCAGGCAGCCAUCACCCUGCAGCGGCGUUACAGAGCCCGUUUGGUCA ..(((((((...((((((.((..(((....((.(((....))).))(((((....))))))))..)).)))))))))))))....(((..((.(.(((........))))))..))).. ( -40.70) >consensus CAGCUGCCUGCAGAUGCACUGGCGUAAUCAUCUCCUCAGAAAACGGGAGCGAAACAGUUUCCUACAACUGCGUCAAGCAGCUAUAACACUGCAGCGACGGUACCGAGCUCGUCUGACCA ..(((((.(((....)))((((((((.....(((((........))))).((((...)))).......)))))))))))))..........(((((((........).))).))).... (-27.83 = -26.17 + -1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:45 2006