Locus 7674

Sequence ID 3R_DroMel_CAF1
Location 20,567,439 – 20,567,544
Length 105
Max. P 0.650547
window12380

overview

Window 0

Location 20,567,439 – 20,567,544
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.09
Mean single sequence MFE -31.68
Consensus MFE -12.22
Energy contribution -14.64
Covariance contribution 2.42
Combinations/Pair 1.17
Mean z-score -2.21
Structure conservation index 0.39
SVM decision value 0.24
SVM RNA-class probability 0.650547
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20567439 105 + 27905053
ACCAGCAGCAUUUCAGC--------AGGAGCACUCAGACAGUCUUUAUAGGCAAAUGAAUUGCUCUAUACCAAGCU--UAUUU--GGGAAAAUGUGGAGCAAAUGCUUAGA---GCUGGC
.(((((.((......))--------..(((((.(((....((((....))))...))).(((((((((((((((..--..)))--)).....)))))))))).)))))...---))))). ( -33.50)
>DroSec_CAF1 21737 113 + 1
ACCAGCAGCAUUUCAGCAUUUCACCAGGAGCACUCAGACAGUCUUUAUAGGCAAAUGAAUUGCUCUAUACCGAGCU--UAUUU--GGAAAAAUGUGGAGCAAAUGCUUGGA---GCUGGU
((((((.((......))......(((..((((.(((....((((....))))...))).(((((((((((((((..--..)))--)).....)))))))))).))))))).---)))))) ( -35.30)
>DroSim_CAF1 21898 105 + 1
ACCAGCAGCAUUUCAGC--------AGGAGCACUCAGACAGUCUUUAUAGGCAAAUGAAUUGCUCUAUACCGAGCU--UAUUU--GGGAAAAUGUGGAGCAAAUGCUUGGA---GCUGGU
((((((.((......))--------..(((((.(((....((((....))))...))).(((((((((((((((..--..)))--)).....)))))))))).)))))...---)))))) ( -34.00)
>DroEre_CAF1 21629 108 + 1
ACCAGCAGCGUUUCAGC--------AGGAGCACUCAGACAGUCUUUAUAGGCAGAUGAAUUGCUCUAUGCCGAGCU--UAUUU--GGGAAAGUGUAGCGGAAAUGCUGGGAAAUGCUGGG
.((((((...(..((((--------(((((((.(((....((((....))))...)))..))))))...(((.(((--(....--....))))....)))...)))))..)..)))))). ( -40.50)
>DroYak_CAF1 22295 98 + 1
ACCAGCAGCAUUUCAGC--------AGGAGCACUCAGACAGUCUUUAUAGGCAAAUGAAUUGCUCUAUGCCCAGCU--UAUUUUCGGAAAAGUGUGGAGGAAAUGCUG------------
.....(((((((((.((--------(((((((.(((....((((....))))...)))..)))))).)))((((((--(.((....)).)))).)))..)))))))))------------ ( -31.20)
>DroPer_CAF1 23886 91 + 1
GCCAGAAGCAUCU----------------GCACUCAGACGGUCUUCAUAAGCAAAUAGGUUUCUCUAUCCGUAAUUCGUAUCUGUGUCAAAGUUUU--------GUUUGG----GUU-GA
((.(((....)))----------------))((((((((((.(((.....(((.(((.(..(..(.....)..)..).))).)))....)))..))--------))))))----)).-.. ( -15.60)
>consensus
ACCAGCAGCAUUUCAGC________AGGAGCACUCAGACAGUCUUUAUAGGCAAAUGAAUUGCUCUAUACCGAGCU__UAUUU__GGGAAAAUGUGGAGCAAAUGCUUGGA___GCUGGU
.((((((((((((.............((((((.(((....((((....))))...)))..))))))............(((((......)))))......))))))).......))))). (-12.22 = -14.64 +   2.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:41 2006