Locus 7672

Sequence ID 3R_DroMel_CAF1
Location 20,559,612 – 20,559,722
Length 110
Max. P 0.678645
window12377

overview

Window 7

Location 20,559,612 – 20,559,722
Length 110
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 74.22
Mean single sequence MFE -17.60
Consensus MFE -1.61
Energy contribution -1.67
Covariance contribution 0.06
Combinations/Pair 1.21
Mean z-score -1.48
Structure conservation index 0.09
SVM decision value 0.30
SVM RNA-class probability 0.678645
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20559612 110 - 27905053
ACUUUGCAAUAUAUAAAUGAAUCUUAUCCUUAAAUGUGAAUAUCUUAAAGAUAUAAUUUGCAUCGAUCAUCUAUAUUAGGCUA--UAUUU----AUAUUCCCAGUGCACUGUGCAU
.....((...(((((.((((.(((((....)))(((..((((((.....)))))...)..))).)))))).)))))...))..--.....----.........((((.....)))) ( -14.80)
>DroSec_CAF1 13925 99 - 1
ACUUUACCAUCUAUAAAUAAAUCUUAUCCUUAAAUGUGAAUAUCCUAAAGAUGUAAGUUGCAUCGAUCAUCUAUCUUAGGCUA--UAUUU----AUAUUCCCAGU-----------
................................((((((((((((((((.(((((.....)))))(((.....))))))))..)--)))))----)))))......----------- ( -15.40)
>DroSim_CAF1 13995 114 - 1
ACUUUACCAUCUAUAAAUGAAUCUUAUCCUUAAAUGUGAAUAUCCUAAAGAUGUAAGUUGCAUCGAUCAUCUAUCUUAGGCUA--UAUCUACAUAUAUUCCCAGUGCACUGUGCAU
.................................(((((.(((((((((.(((((.....)))))(((.....))))))))..)--))).))))).........((((.....)))) ( -16.00)
>DroEre_CAF1 13640 95 - 1
ACUUCACC--CUAUAAAUGAAUCUCACCCCUAAAUAUGAAUAUCUUUAGGA------------UGAU-AUUCCUCAUAGGGUA--UAUUU----UUAUUCCCAGUGCAAUGUGCAU
.....(((--((((....((((.(((..((((((.((....)).)))))).------------))).-))))...))))))).--.....----.........((((.....)))) ( -20.50)
>DroYak_CAF1 14152 105 - 1
ACUUAAA----UAUGAAU--AUCUCUUCCUUGAAUGUGAAUAUCCUUAAGAUUUAAGCUACAUUGAU-AUCUAUCUCAGGGUAUGUAUUU----UUAUGCCCAGUGCAGUGUGCAU
.((((((----(((..((--((.((......))))))..))))..)))))......((.((((((..-..((......(((((((.....----.)))))))))..)))))))).. ( -21.30)
>consensus
ACUUUACCAUCUAUAAAUGAAUCUUAUCCUUAAAUGUGAAUAUCCUAAAGAUGUAAGUUGCAUCGAUCAUCUAUCUUAGGCUA__UAUUU____AUAUUCCCAGUGCACUGUGCAU
............................(((((....((..(((....................)))..))....))))).......................((((.....)))) ( -1.61 =  -1.67 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:39 2006