| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,558,802 – 20,558,898 |
| Length | 96 |
| Max. P | 0.919476 |
| Location | 20,558,802 – 20,558,898 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 84.23 |
| Mean single sequence MFE | -31.20 |
| Consensus MFE | -23.46 |
| Energy contribution | -24.47 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20558802 96 + 27905053 AUGGGC-GACAAUGCGUU----GCGUUGCAUUGUUCGCUGCGCUUUGUGCAGAUUCGCUAAUUAAUUUGCAUAAGCCAAGUGCACAAAAGUUCCAUCAAUG ((((((-(((((((((..----....))))))).))))(((((((((((((((((........))))))))))....)))))))........))))..... ( -33.60) >DroEre_CAF1 12847 96 + 1 CUGGGC-GGCAAGGCGUGGCAU----UGCAUUGUUCGCUGCGCUUUGUGCAGAUUCGUUAAUUAAUUUGCAUAAGCCAAGGCUACAAAAGUUCCAUCAACG ...(((-.((((((((..((..----..........))..))))))))(((((((........)))))))....)))..((..((....)).))....... ( -29.60) >DroYak_CAF1 13340 97 + 1 CUGGGCCCACAAUGCGUUGCAU----UACAUUGUUCGCUGUGCUUUGUGCAGAUUCGCUAAUUAAUUUGCAUAAGCGUAGCGCACAAAAGUUCCAUCAAUG .(((..(...(((((...))))----)...((((.((((((((((.(((((((((........))))))))))))))))))).))))..)..)))...... ( -30.40) >consensus CUGGGC_GACAAUGCGUUGCAU____UGCAUUGUUCGCUGCGCUUUGUGCAGAUUCGCUAAUUAAUUUGCAUAAGCCAAGCGCACAAAAGUUCCAUCAAUG .(((((.(((((((((..........))))))))).))(((((((((((((((((........)))))))))))....))))))........)))...... (-23.46 = -24.47 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:38 2006