Locus 7670

Sequence ID 3R_DroMel_CAF1
Location 20,554,468 – 20,554,569
Length 101
Max. P 0.729628
window12375

overview

Window 5

Location 20,554,468 – 20,554,569
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 89.08
Mean single sequence MFE -24.67
Consensus MFE -21.47
Energy contribution -21.80
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.87
SVM decision value 0.42
SVM RNA-class probability 0.729628
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20554468 101 + 27905053
AGCGAAAAGUCUUGUUAACUCGAGACGCAGACAGCUACACACACGUGGAAGUGUCUCAGCUCCAUCCAGAGCCACCCCUCCUUAUCCCAGUCCAUCGCAUC
.((((...((((((......))))))(.(((((.((((......))))...)))))).((((......))))......................))))... ( -26.10)
>DroSec_CAF1 11204 91 + 1
AGCGAAAAGUCUUGUUAACUCGAGACGCAGACAGCUACACACACGUGGAAGUGUCUCAGCUCCACUCAGAGCCGCUCCUCCUCCUCC----------CAUC
((((....((((((......))))))(.(((((.((((......))))...)))))).((((......))))))))...........----------.... ( -24.30)
>DroSim_CAF1 11261 91 + 1
AGCGAAAAGUCUUGUUAACUCGAGACGCAGACAGCUACACACACGUGGAAGUGUCUCAGCUCCACUCAGAGCCGCCCCUCCUCCUCC----------CAUC
.(((....((((((......))))))(.(((((.((((......))))...)))))).((((......)))))))............----------.... ( -23.60)
>consensus
AGCGAAAAGUCUUGUUAACUCGAGACGCAGACAGCUACACACACGUGGAAGUGUCUCAGCUCCACUCAGAGCCGCCCCUCCUCCUCC__________CAUC
.(((....((((((......))))))(.(((((.((((......))))...)))))).((((......))))))).......................... (-21.47 = -21.80 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:37 2006