Locus 767

Sequence ID 3R_DroMel_CAF1
Location 2,674,138 – 2,674,238
Length 100
Max. P 0.805164
window1222

overview

Window 2

Location 2,674,138 – 2,674,238
Length 100
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.60
Mean single sequence MFE -22.25
Consensus MFE -18.03
Energy contribution -17.92
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -1.42
Structure conservation index 0.81
SVM decision value 0.63
SVM RNA-class probability 0.805164
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2674138 100 - 27905053
UUAUGCCCGAGCAGUCAAAGUGAGACAUUGGCGCUUCGAGCACGUAUCCGCGGAUACA----CCGGAAUAACAGAAAAA--AAAGCACAAAUAAAAA-AA------------CUCAAAC
...(((.(((((.(((((.(.....).))))))).))).))).(((((....))))).----.................--................-..------------....... ( -19.10)
>DroVir_CAF1 35154 112 - 1
UUAUGCCCGAGCAGUCAAAGUGAGACAUUGGCGCUUCGAGCACGUAUUCGCGGAUACAUUCAUCGAAAUAGAAAC---A--GAAACAGAAACCGAAA-AC-UUUUGGCCGUGGCUAAAC
...(((.(((((.(((((.(.....).))))))).))).))).....((((((.........((......))...---.--..........(((((.-..-.)))))))))))...... ( -23.10)
>DroSim_CAF1 26663 109 - 1
UUAUGCCCGAGCAGUCAAAGUGAGACAUUGGCGCUUCGAGCACGUAUCCGCGGAUACA----CCGGAAUAACAAAAAA---AAAACACAAAUAAAAA-AAGCUCCAAC--AGCUCAAAC
........((((.(((.......))).((((.((((.......(((((....))))).----..(......)......---................-)))).)))).--.)))).... ( -22.90)
>DroEre_CAF1 26819 106 - 1
UUAUGCCCGAGCAGUCAAAGUGAGACAUUGGCGCUUCGAGCACGUAUCCGCGGAUACA----CCGGAAUAACAAA-------AAACACAAAUAAAAAAUAGCUCAAGC--AGCUUAAAC
........((((.(((((.(.....).)))))((((.((((..(((((....))))).----..(......)...-------..................))))))))--.)))).... ( -25.90)
>DroYak_CAF1 33975 113 - 1
UUAUGCCCCGGCAGUCAAAGUGAGACAUUGGCGCUUCGAGCACGUAUCCGCGGAUACA----CCGGAAUAACAAAAAACAAAAAACACAAAUAAAAAAUAGCUUAAAC--AGCUUGAAC
...(((....)))(((((.(.....).)))))..(((((((..(((((....))))).----..(......)....................................--.))))))). ( -21.70)
>DroAna_CAF1 21559 106 - 1
UUAUGCCCGAGCAGUCAAAGUGAGACAUUGGCGCAUCGAGCACGUAUCCGCGGAUACA----CCGGAAUAAAAAA---CAAAAAACACUGAGCAACCGAAACUCAAA------UCAAAC
...(((.(((((.(((((.(.....).))))))).))).))).(((((....))))).----.............---..........((((.........))))..------...... ( -20.80)
>consensus
UUAUGCCCGAGCAGUCAAAGUGAGACAUUGGCGCUUCGAGCACGUAUCCGCGGAUACA____CCGGAAUAACAAA______AAAACACAAAUAAAAA_AAGCUCAAAC__AGCUCAAAC
...(((.(((((.(((((.(.....).))))))).))).))).(((((....))))).............................................................. (-18.03 = -17.92 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:35 2006