| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,552,629 – 20,552,724 |
| Length | 95 |
| Max. P | 0.537060 |
| Location | 20,552,629 – 20,552,724 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 83.64 |
| Mean single sequence MFE | -26.25 |
| Consensus MFE | -18.75 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20552629 95 + 27905053 CGAUUGCAUUGGAUGC------------CUCAUUUCGGAAUUAGCAACUGCAUCCGUGAGGUUGACAUUUCCCAGCCAGAGUUCGCAUUCAAAUUGCAAAU-----GAAUGC ((.(((((((((((((------------(((.((.((((....((....)).)))).))(((((........))))).)))...))))))))..))))).)-----)..... ( -27.30) >DroSec_CAF1 9288 95 + 1 CGAUUGCAUUGGAUGC------------CUCAUUUCGGAAUUAGCAACUGCAUCCGUGAGGCUGACAUUUCCCAGCCAGAGUUCGCAUUCAAAUUGCAAAU-----GAAAGC ((.(((((((((((((------------(((.((.((((....((....)).)))).))(((((........))))).)))...))))))))..))))).)-----)..... ( -29.70) >DroSim_CAF1 9334 95 + 1 CGAUUGCAUUGGAUGC------------CUCAUUUCGGAAUUAGCAACUGCAUCCGUGAGGUUGACAUUUCCCAGCCAGAGUUCGCAUUCAAAUUGCAAAU-----GAAAGC ((.(((((((((((((------------(((.((.((((....((....)).)))).))(((((........))))).)))...))))))))..))))).)-----)..... ( -27.30) >DroEre_CAF1 9244 95 + 1 CGAUUGCAUUGGAUGC------------CUCAUUUCGGAAUUAGCAACUGCAUCCGUGAGGUUGACAUUUCCCAGCCAGAGCUUGCAUUCAAAUUGCAAAU-----GAAAGC ((.(((((((((((((------------(((.((.((((....((....)).)))).))(((((........))))).)))...))))))))..))))).)-----)..... ( -27.30) >DroYak_CAF1 9483 100 + 1 CGAUUGCAUUGGAUGC------------CUCAUUUUGGAAUUAGCAACUGCAUCCGUGAGGUUGACAUUUCCCAUCCAGAGUUCGCAUUCAAAUUGCAAAUGAAAUGAAAGC ((.(((((((((((((------------...((((((((....((....))..((....)).............))))))))..))))))))..))))).)).......... ( -27.70) >DroAna_CAF1 10049 102 + 1 CGAUUGCAU---AUGCGUCUCAGUUCAGCUCAGUCCAGGAUUAAUAAAUGAAUCCGCUCCGCUGACAUUUCCCAGCCG--CUCAAUAUUCCAAUUGCAAAU-----AAGAGC .(((.((..---..)))))........((((......(((((........)))))((...((((........)))).)--)....................-----..)))) ( -18.20) >consensus CGAUUGCAUUGGAUGC____________CUCAUUUCGGAAUUAGCAACUGCAUCCGUGAGGUUGACAUUUCCCAGCCAGAGUUCGCAUUCAAAUUGCAAAU_____GAAAGC ...(((((((((((((................(..((((....((....)).))))..)(((((........))))).......))))))))..)))))............. (-18.75 = -19.08 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:36 2006