Locus 7668

Sequence ID 3R_DroMel_CAF1
Location 20,551,400 – 20,551,491
Length 91
Max. P 0.946991
window12373

overview

Window 3

Location 20,551,400 – 20,551,491
Length 91
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 76.01
Mean single sequence MFE -20.70
Consensus MFE -10.87
Energy contribution -10.48
Covariance contribution -0.38
Combinations/Pair 1.42
Mean z-score -2.24
Structure conservation index 0.53
SVM decision value 1.37
SVM RNA-class probability 0.946991
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20551400 91 - 27905053
CCCUCUUG-CGAUUUUUUUUUUC--UUUUGUUGUCUUUGUUGCCACGUCUCUGGCAGCAAAUUGAAAAUCGUUGAAAAGUAUGUUAAUUGGCUA
...((..(-((((((((......--..........((((((((((......))))))))))..))))))))).))................... ( -19.07)
>DroPse_CAF1 9157 79 - 1
UCCCAUUA-CAAUCCCUG---CC--CC---------UUCAGAUCCGUUCUUGGGGAGGAAAUUGAAAAUCAUUGAAAAGUAUGUUAAUUGAUUA
........-((((.(((.---((--((---------...(((.....))).)))))))..))))..(((((((((........)))).))))). ( -16.00)
>DroSec_CAF1 8060 75 - 1
----CUUG-CGAUUUU---UUUC--UU---------UUGUUGCCACGUCUCUGGCAGCAAAUUGAAAAUCGUUGAAAAGUAUGUUAAUUGGCUA
----...(-(((((((---(...--.(---------(((((((((......))))))))))..)))))))))...................... ( -21.90)
>DroSim_CAF1 8096 77 - 1
----CUUG-CCAUUUUUU-UUUC--UU---------UUGUUGCCACGUCUCUGGCAGCAAAUUGAAAAUCGUUGAAAAGUAUGUUAAUUGGCUA
----...(-(((.....(-((((--.(---------(((((((((......))))))))))..)))))..(((((........))))))))).. ( -21.00)
>DroEre_CAF1 7990 87 - 1
CCCUCUUG-CGAUUUUUU-AUUCGG-----UUGCCUUUGUUGCCACGUCUCAGGCAGCAAAUUGAAAAUCGUUGAAAAGUAUGUUAAUUGGCUA
.((....(-(((((((((-(..(((-----((...(((((((((........))))))))).....))))).)))))))).))).....))... ( -22.50)
>DroYak_CAF1 8200 93 - 1
CCUUCUUGGCAAUUUUUU-GUUGGGUUUUGUUGCCUUUGUUGCCACGUCUCUGGCAGCAAAUUGAAAAUCGUUGAAAAGUAUGUUAAUUGGCUA
....((..((((....))-))..)).......(((..((((((((......))))))))((((((....(........)....))))))))).. ( -23.70)
>consensus
CCCUCUUG_CGAUUUUUU_UUUC__UU_________UUGUUGCCACGUCUCUGGCAGCAAAUUGAAAAUCGUUGAAAAGUAUGUUAAUUGGCUA
....................................(((((((((......)))))))))..........((..(............)..)).. (-10.87 = -10.48 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:35 2006