Locus 7666

Sequence ID 3R_DroMel_CAF1
Location 20,548,431 – 20,548,527
Length 96
Max. P 0.556659
window12371

overview

Window 1

Location 20,548,431 – 20,548,527
Length 96
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 70.32
Mean single sequence MFE -21.82
Consensus MFE -5.10
Energy contribution -5.10
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.23
SVM decision value 0.05
SVM RNA-class probability 0.556659
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20548431 96 + 27905053
ACUAUUAACUUGCGA-----------AAAAUACCCAAAAGUUCCUGUCCUU----UUAUACAUCUUGCA----CGUUAUUAGUUUGCUCGCUGAAUUUUCUCAGUGUAAGAUCCC
((((.((((.(((((-----------.........(((((........)))----)).......)))))----.)))).)))).....((((((......))))))......... ( -16.59)
>DroSec_CAF1 5057 107 + 1
ACUCUUAACUUGCGAAUUAUCUUUUAAAAAUACCCUAAAGUUGCUGUUCUU----UUAUAUAUCAUGCA----GGUUAUUAAUUCGAUCGCUGAAUUUUCUCAGUGUAAGACCCC
.....(((((((((...(((....(((((..((............))..))----))).)))...))))----))))).....((...((((((......))))))...)).... ( -16.50)
>DroSim_CAF1 5079 107 + 1
ACUCUUAACCUGCGAAUUAUCUUUUAAAAAUACCCAAAAGUUGCUGUCCUU----UUAUAUAUCAUGCA----GGUUAUUAGUUUGCUCGCUGAAUUUUCUCAGUGUAAUACCCC
(((..(((((((((..(((.....)))........(((((........)))----))........))))----)))))..))).....((((((......))))))......... ( -20.50)
>DroEre_CAF1 5022 110 + 1
--UCUUCACUUGCGAAUUAUCGCUUAGGAAAUUCAAAGAGUGGCUGGCUUU---UAUAUAUAUUAUAAAUCAGUGUGCUUAGUAUGUUCGCUGAAUUAUGCCAGUGUAGGUCCCC
--.....(((((((((((.((.....)).)))))........((((((.((---((((.....))))))((((((.((.......)).)))))).....)))))))))))).... ( -29.60)
>DroYak_CAF1 5192 111 + 1
ACUCUUAAGUAGCGAUUUAACGCUUACAAAACUCAAAAAGUUGCUAGUUUUAAAUAUGUAUAUCAAAAA----GGUGUUUAGUAGUUACGCUGAUUUUUGGCAGUGUAAGUCGCC
...........((((((((.((((..(((((.(((....((.((((...((((((((.(.........)----.)))))))))))).))..))).)))))..)))))))))))). ( -25.90)
>consensus
ACUCUUAACUUGCGAAUUAUCGCUUAAAAAUACCCAAAAGUUGCUGUCCUU____UUAUAUAUCAUGCA____GGUUAUUAGUUUGCUCGCUGAAUUUUCUCAGUGUAAGACCCC
........................................................................................(((((........)))))......... ( -5.10 =  -5.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:33 2006