Locus 7665

Sequence ID 3R_DroMel_CAF1
Location 20,548,254 – 20,548,344
Length 90
Max. P 0.606041
window12370

overview

Window 0

Location 20,548,254 – 20,548,344
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -14.33
Consensus MFE -8.02
Energy contribution -8.47
Covariance contribution 0.45
Combinations/Pair 1.13
Mean z-score -1.76
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.606041
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20548254 90 - 27905053
AAAGCCCCCCA-------AUUCAUGGCUGCUGUAGCAGAUACAGAAUACUUAGUAAUAUCCAUAAAAUAACUCAAAUCUCUUUUGCAGAUUUGCCA---C
...........-------((((.((.((((....))))...)))))).........................((((((((....).)))))))...---. ( -13.50)
>DroSec_CAF1 4882 89 - 1
AAAGCCC-CCA-------AUUCAUGGCUGCUGUAGCAGAUACAGAAUACUUUGUAAUAUCCAUAAAAUAACUCAAAUCUCUUUUGCAGAUUUGCCA---C
.......-...-------....((((((((....)))).((((((....))))))....)))).........((((((((....).)))))))...---. ( -15.90)
>DroSim_CAF1 4903 90 - 1
AAAGCCCCCCA-------AUUCAUGGCUGCUGUAGCAGAUACAGAAUACUUUGUAAUAUCCAUAAAAUAACUCAAAUCUCUUUUGCAGAUUUGCCA---C
...........-------....((((((((....)))).((((((....))))))....)))).........((((((((....).)))))))...---. ( -15.90)
>DroEre_CAF1 4841 92 - 1
AAAUCCA-CCA-------AUUCAUGGCUGCUGUAGCAGAUACAGAAUACUUUGCAAUAUCCAUAAAAUAACUCAAAUCUCUUUUGCAGACUUGCCACCAC
.......-...-------.....((((..(((((.....))))).....(((((((..........................)))))))...)))).... ( -14.27)
>DroYak_CAF1 5016 75 - 1
----------------------AUGGCUGCUGUAGCAGAUACAGAAUACUUCGCAAUAUCCAUAAAAUAAGUCAAAUCUCCUUUGCAGAUUUGCCA---C
----------------------.((((..(((((.....))))).............................((((((.......))))))))))---. ( -12.30)
>DroAna_CAF1 4673 92 - 1
CAAGCCC-UAAAUCCUGUAUUCAAACCUGAUA---AACAUUCAGGGCACUUUCUAAUAACCAUAAAAUAACUCAAAUCUUUUUGCCAGAUUUGUUU----
...((((-(.((...(((..(((....)))..---.))))).))))).........................(((((((.......)))))))...---- ( -14.10)
>consensus
AAAGCCC_CCA_______AUUCAUGGCUGCUGUAGCAGAUACAGAAUACUUUGUAAUAUCCAUAAAAUAACUCAAAUCUCUUUUGCAGAUUUGCCA___C
.......................((((..(((((.....))))).............................((((((.......)))))))))).... ( -8.02 =  -8.47 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:32 2006