Locus 7664

Sequence ID 3R_DroMel_CAF1
Location 20,541,564 – 20,541,656
Length 92
Max. P 0.522968
window12369

overview

Window 9

Location 20,541,564 – 20,541,656
Length 92
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 84.86
Mean single sequence MFE -31.72
Consensus MFE -25.59
Energy contribution -25.90
Covariance contribution 0.31
Combinations/Pair 1.10
Mean z-score -1.57
Structure conservation index 0.81
SVM decision value -0.02
SVM RNA-class probability 0.522968
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20541564 92 - 27905053
UCUCGUCCUCAUGCACACUGUACUUCGGUGGCAAAUAUGUCUGGGGACGGGCUGA-GGAGGAUGGUGUUUGGAUCUGGGUCUGGGAAGGAGGC
((((((((((.(((.(((((.....)))))))).....(((((....)))))...-.))))))....((..(((....)))..))...)))). ( -34.50)
>DroSec_CAF1 12596 92 - 1
UCUCGUCCUCAUGCACACUGUACUUCGGUGGCAAAUAUGUCUGGGGUCGGGCUGA-GGAGGAUGGUGUUUGGAUCUGGGUCUGGGAAGGAGGC
((((((((((.(((.(((((.....)))))))).....(((((....)))))...-.))))))....((..(((....)))..))...)))). ( -30.30)
>DroSim_CAF1 12795 92 - 1
UCUCGUCCUCAUGCACACUGUACUUCGGUGGCAAAUAUGUCUGGGGACGGGCUGA-GGAGGAUGGUGUUUGGAUCUGGGUCUGGGAAGGAGGC
((((((((((.(((.(((((.....)))))))).....(((((....)))))...-.))))))....((..(((....)))..))...)))). ( -34.50)
>DroEre_CAF1 14724 86 - 1
UCUCUUCCUCGUGCACACUGUACUUCGGUGGCAAAUAUGUCUGGGGACGGGCUGA-GGAGGAUGGGGUUAGGAUC------UGGGACGGAGGU
((((((((((.(((.(((((.....)))))))).....(((((....))))).))-)))(..(.((((....)))------).)..)))))). ( -32.30)
>DroYak_CAF1 13040 86 - 1
ACUCGUCCUCGUGCACACUGUACUUUGGUGGCAAAUAUGUCUGGGGACGGGCUGA-GGAGGAUGGGGUCUGGAUC------UGGGAUGGAGGU
.(((((((((.(((.(((((.....)))))))).....(((((....)))))...-.)))))))))((((.....------..))))...... ( -32.00)
>DroAna_CAF1 13110 83 - 1
UCGCGUCCUCAUGUACACUGUAGUUUGGUGGCAGAUAUGUCUGGGGGCGGGCGGACGGAGGAGAGGGCGUGUGU-------UGGGGAGGA---
.(((((((((.....(.((((.(((((.(..((((....))))..).)))))..)))).)..)))))))))...-------.........--- ( -26.70)
>consensus
UCUCGUCCUCAUGCACACUGUACUUCGGUGGCAAAUAUGUCUGGGGACGGGCUGA_GGAGGAUGGGGUUUGGAUC______UGGGAAGGAGGC
..((((((((.(((.(((((.....)))))))).....(((((....))))).....))))))))............................ (-25.59 = -25.90 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:31 2006