Locus 7662

Sequence ID 3R_DroMel_CAF1
Location 20,536,580 – 20,536,679
Length 99
Max. P 0.983886
window12367

overview

Window 7

Location 20,536,580 – 20,536,679
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 89.73
Mean single sequence MFE -18.48
Consensus MFE -18.42
Energy contribution -18.42
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 1.00
SVM decision value 1.96
SVM RNA-class probability 0.983886
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20536580 99 + 27905053
UUAUCAUACUCGUAAAUGUGAAGCUAUGCAGCAUUUUACUGUAGUUAGAUUUUUUGUAUAGAAUCAACGUUUGCAGAUAAAAACCAA---------AACGAAAACCGA-
...........((((((((((..((((((((.((((.((....)).))))...))))))))..)).)))))))).............---------............- ( -18.40)
>DroPse_CAF1 8067 109 + 1
UUAUCAUACUCGUAAAUGUGAAGCUAUGCAGCAUUUUACUGUAGUUAGAUUUUUUGUAUAGAAUCAACGUUUGCAGCUAAACAAAAAAAAACAACAAACAAAAACAAAA
...........((((((((((..((((((((.((((.((....)).))))...))))))))..)).))))))))................................... ( -18.40)
>DroSim_CAF1 7752 99 + 1
UUAUCAUACUCGUAAAUGUGAAGCUAUGCAGCAUUUUACUGUAGUUAGAUUUUUUGUAUAGAAUCAACGUUUGCAGCUAAAAACCAA---------AACGAAAACCGA-
...........((((((((((..((((((((.((((.((....)).))))...))))))))..)).)))))))).............---------............- ( -18.40)
>DroEre_CAF1 7718 99 + 1
UUAUCAUACUCGUAAAUGUGAAGCUAUGCAGCAUUUUACUGUAGUUAGAUUUUUUGUAUAGAAUCAACGUUUGCAGCUAAAAACCAA---------AACGAAAACCGA-
...........((((((((((..((((((((.((((.((....)).))))...))))))))..)).)))))))).............---------............- ( -18.40)
>DroWil_CAF1 8632 90 + 1
CUAUACUACUCGUAAAUGUGAAGCUAUGCAGCAUUUCACUGUAGUUAGAUU-UUUGUAUAGAAUCAACGUUUGCAGCUAAAA--CAA---------AAAAAA-------
...........((((((((((..((((((((.((((.((....)).)))).-.))))))))..)).))))))))........--...---------......------- ( -18.90)
>DroYak_CAF1 7995 100 + 1
UUAUCAUACUCGUAAAUGUGAAGCUAUGCAGCAUUUUACUGUAGUUAGAUUUUUUGUAUAGAAUCAACGUUUGCAGCUAAAAACCAAA--------AACGAAAACCGA-
...........((((((((((..((((((((.((((.((....)).))))...))))))))..)).))))))))..............--------............- ( -18.40)
>consensus
UUAUCAUACUCGUAAAUGUGAAGCUAUGCAGCAUUUUACUGUAGUUAGAUUUUUUGUAUAGAAUCAACGUUUGCAGCUAAAAACCAA_________AACGAAAACCGA_
...........((((((((((..((((((((.((((.((....)).))))...))))))))..)).))))))))................................... (-18.42 = -18.42 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:29 2006