Locus 7661

Sequence ID 3R_DroMel_CAF1
Location 20,532,889 – 20,532,985
Length 96
Max. P 0.892626
window12366

overview

Window 6

Location 20,532,889 – 20,532,985
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.45
Mean single sequence MFE -23.78
Consensus MFE -16.61
Energy contribution -16.63
Covariance contribution 0.02
Combinations/Pair 1.33
Mean z-score -1.42
Structure conservation index 0.70
SVM decision value 0.97
SVM RNA-class probability 0.892626
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20532889 96 - 27905053
-GCACAUUGUAUAUUGGAAUAAUAAUGUAUA------CCUAUAACGAAGCUCACCUGAUCUGUUGGCAGUAGUGAAAAGUCAUCGGGUGGGUUGGUUAUUACA
-......(((((((((......)))))))))------...(((((..((((((((((((((.((.((....)).)).))..)))))))))))).))))).... ( -26.60)
>DroGri_CAF1 5091 103 - 1
AGUUCAAUUUGAGUUGGAAACGCAAGUUAAACGGAAGUCUUAAAAGAAUCUUACCUGAUCUGUUGGCAGUAAUGAGAAGUCAUCGGGUGGGUUGGUUAUUACA
.((((..((((((.....(((....)))..((....)))))))).))))((((((((((.......((....)).......))))))))))............ ( -22.04)
>DroSec_CAF1 4048 96 - 1
-GCACAUUUUAUAUUGGAAUGUUAGUGUAUA------CUUGUAAAGAAACUCACCUGAUCUGUUGGCAGUAGUGAAAAGUCAUCGGGUGGGUUGGUUAUUACA
-..(((((((.....))))))).........------..(((((...((((((((((((((.((.((....)).)).))..)))))))))))).....))))) ( -23.60)
>DroSim_CAF1 4105 96 - 1
-GCACAUUUUAUAUUGGAAUGAUAAUAUAUA------CUUGUAAAGAAACUCACCUGAUCUGUUGGCAGUAGUGAAAAGUCAUCGGGUGGGUUGGUUAUUACA
-........(((((((......)))))))..------..(((((...((((((((((((((.((.((....)).)).))..)))))))))))).....))))) ( -23.20)
>DroEre_CAF1 4075 96 - 1
-GCACAUUGUAUAGUGGAAUGAUAAUGUAUG------CUUAUGGGGCAACUUGCCUGAUCUGUUGGCAGUAGUGAAAAGUCAUCGGGUGGGUUGGUUAUUACA
-(((((((((.((......)))))))))..)------).....((.(((((..((((((((.((.((....)).)).))..))))))..))))).))...... ( -24.60)
>DroMoj_CAF1 4215 90 - 1
-AUUCAAAUAUAUUC---------UUUUACAUGAAAGGCA---ACUGAGCUCACCUGAUCUGUUGGCAGUAAUGAGAAGUCAUCGGGUGGGUUGGUUAUUACA
-............((---------((((....)))))).(---(((.((((((((((((.......((....)).......))))))))))))))))...... ( -22.64)
>consensus
_GCACAUUUUAUAUUGGAAUGAUAAUGUAUA______CCUAUAAAGAAACUCACCUGAUCUGUUGGCAGUAGUGAAAAGUCAUCGGGUGGGUUGGUUAUUACA
.........(((((((......)))))))..................(((((((((((.(((....)))...(((....)))))))))))))).......... (-16.61 = -16.63 +   0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:28 2006