Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,672,524 – 2,672,632 |
Length | 108 |
Max. P | 0.760989 |
Location | 2,672,524 – 2,672,632 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 90.72 |
Mean single sequence MFE | -37.65 |
Consensus MFE | -30.99 |
Energy contribution | -31.08 |
Covariance contribution | 0.10 |
Combinations/Pair | 1.06 |
Mean z-score | -2.21 |
Structure conservation index | 0.82 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2672524 108 - 27905053 GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCAAGGGUGGGCCAAGAUCAAAG--AGCUGGAGAGCUGGCUGCAUCGAUUGCAUA ...(((((((((......)))))(((((((((.((((((((....((((((((......))))))))......((...--...))))))).))))))))))))))))... ( -39.40) >DroSec_CAF1 32017 110 - 1 GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAGAGAGCUGGAGAGCUGGCUGCAUCGAUUGCAUA ...(((((((((......)))))(((((((((.((((((((....((((((((......))))))))..((.((.....)).)).))))).))))))))))))))))... ( -40.60) >DroSim_CAF1 25094 110 - 1 GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAGAGAGCUGGAGAGCUGGCUGCAUCGAUUGCAUA ...(((((((((......)))))(((((((((.((((((((....((((((((......))))))))..((.((.....)).)).))))).))))))))))))))))... ( -40.60) >DroEre_CAF1 25212 107 - 1 GUAGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAG--AGCUGGAGAGCUGGCUG-CUCGAUUGCAUA ....((((((((......))))))))((((((.((.((((.(((.((((((((......))))))))...))).))))--.......((((.....)-))))))))))). ( -36.40) >DroYak_CAF1 32439 108 - 1 GUCGUAAGUGGAUAAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAG--AGCUGGAGAACUGGCGGGUUCGAUUGCAUA ....((((((((......))))))))((((((.((.((((.(((.((((((((......))))))))...))).))))--.((..(....)..))......)))))))). ( -35.20) >DroAna_CAF1 19738 98 - 1 --AGUAAGUGGAAGAAAUUCCACUUGAUGUAGGUCACUUUCAUUUGCCUAGAUCGCCGAGGGUGGGCCAAGAUCAAAG--AGC--------UGGUAGCCCCGAUUGCAUA --...((((((((....))))))))(((.((((.((........)))))).)))((((.((((..((((...((...)--)..--------)))).))))))...))... ( -33.70) >consensus GUCGUAAGUGGAUGAAAUUCCACUUGAUGUAGGUCACUUUCAUUCGCCCAUCUCGCCGAGGGUGGGCCAAGAUCAAAG__AGCUGGAGAGCUGGCUGCAUCGAUUGCAUA ....((((((((......))))))))((((((.((.((((.(((.((((((((......))))))))...))).))))...((..(....)..))......)))))))). (-30.99 = -31.08 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:34 2006