Locus 7658

Sequence ID 3R_DroMel_CAF1
Location 20,524,922 – 20,525,016
Length 94
Max. P 0.725949
window12361

overview

Window 1

Location 20,524,922 – 20,525,016
Length 94
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.49
Mean single sequence MFE -23.05
Consensus MFE -9.41
Energy contribution -10.55
Covariance contribution 1.14
Combinations/Pair 1.22
Mean z-score -2.95
Structure conservation index 0.41
SVM decision value 0.41
SVM RNA-class probability 0.725949
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20524922 94 + 27905053
UAUGAUUUAUUCAUCAUU--UUCGUUGAAUGAUGUUCCAAUGAUAAGCAGGCGCAAUAUUGCGAGCAGAUGAAAAUGAAG--AAAAACUAAAUUAUAU
((((((((((((.(((((--((((((......((((((((((....((....))..))))).)))))))))))))))).)--))....))))))))). ( -23.80)
>DroSec_CAF1 7332 94 + 1
UAUGAUUUAUUCAUCAUU--UUCGUUGAAUGAUGUUCCAAUGAUAAGCAGGCGCAGUAUUGCGAGCAGAUGAAAAUGAAG--AAGAACUAAAUUAUAU
((((((((((((.(((((--((((((......((((((((((....((....))..))))).)))))))))))))))).)--))....))))))))). ( -24.90)
>DroSim_CAF1 9114 94 + 1
UAUGAUUUAUUCAUCAUU--UUCGUUGAAUGAUGUUCCAAUGAUAAGCAGGCGCAGUAUUGCGAGCAGAUGAAAAUGAAG--AAGAACUAAAUUAUAU
((((((((((((.(((((--((((((......((((((((((....((....))..))))).)))))))))))))))).)--))....))))))))). ( -24.90)
>DroEre_CAF1 7383 91 + 1
UAUGAUUUAUUCAUCAUU--UUCGUUGAAUGAUGUUCCAAUGAUAAGCUGGCGCAGUGUUGCGAGCAGAUGAUGAAGA-----AGAACUAAAUUAUAU
((((((((((((((((((--(((((((..........))))))...(((.(((......))).)))))))))))))..-----.....))))))))). ( -24.21)
>DroYak_CAF1 7650 96 + 1
UAUAAUUUAUUCAUCAUU--UUCGUUGAAUGAUGUUCCAAUGAUAAGCUGGCGCAGUAAUGCGAGAAGAUGAUGAUGAACUAAAGUACUAAAUUAUAU
(((((((((.((((((((--((((((..((.((......)).)).)))...((((....)))).)))))))))))...((....))..))))))))). ( -24.20)
>DroPer_CAF1 7737 81 + 1
UAAGUUAUAUUU-UGAUUGGUUCCUUGAAUGAUAUUCAAAUGCU--------------UUUAAAGCAGGUGAACAUGAAA--UUGAAGGAGAAUAUGU
..(((((.....-)))))..((((((.(((.((.((((..((((--------------.....))))..)))).))...)--)).))))))....... ( -16.30)
>consensus
UAUGAUUUAUUCAUCAUU__UUCGUUGAAUGAUGUUCCAAUGAUAAGCAGGCGCAGUAUUGCGAGCAGAUGAAAAUGAAG__AAGAACUAAAUUAUAU
(((((((((...........((((((......((((((((((....((....))..))))).)))))......)))))).........))))))))). ( -9.41 = -10.55 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:23 2006