Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,519,484 – 20,519,604 |
Length | 120 |
Max. P | 0.584288 |
Location | 20,519,484 – 20,519,604 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.56 |
Mean single sequence MFE | -36.00 |
Consensus MFE | -35.07 |
Energy contribution | -35.40 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -0.74 |
Structure conservation index | 0.97 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20519484 120 - 27905053 GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60) >DroVir_CAF1 1839 120 - 1 GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGAGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.((((......(((((.......)))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -32.80) >DroGri_CAF1 1947 120 - 1 GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGAGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.((((......(((((.......)))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -32.80) >DroYak_CAF1 2084 120 - 1 GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60) >DroAna_CAF1 2008 120 - 1 GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60) >DroPer_CAF1 2209 120 - 1 GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... ( -37.60) >consensus GCUGGCUUGUGGGAAUGUCAUGCCGGUAAAUGAAGGUGAUAGGGUUUCGGUGUACAUCUCACACCCUGUACCUUGAAGAUAAUCAUUUUGCCAGGCCUGUGUGUCUGGUGACUGAAAGUU ((((((..((((.....))))))))))...(.(((((.(((((((....(((.......))))))))))))))).)......(((..(..((((((......))))))..).)))..... (-35.07 = -35.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:22 2006