Locus 7655

Sequence ID 3R_DroMel_CAF1
Location 20,517,470 – 20,517,590
Length 120
Max. P 0.804334
window12357

overview

Window 7

Location 20,517,470 – 20,517,590
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.75
Mean single sequence MFE -33.35
Consensus MFE -23.50
Energy contribution -22.95
Covariance contribution -0.55
Combinations/Pair 1.42
Mean z-score -1.47
Structure conservation index 0.70
SVM decision value 0.63
SVM RNA-class probability 0.804334
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20517470 120 + 27905053
UUUAAAACGAUCCCUAUGAUAAUUCGCAGGCAUACUUGCUGAACAUACCAUCAUGGGAUUGGAAACAGGGCGACGAUGUCAUCUGCCUGGCCGAACUGAAGCUGGGCUUCAUUGCCCAGA
.......(((((((.(((((..((((((((....))))).)))......))))))))))))......((((((.((........(((..((.........))..))).)).))))))... ( -39.60)
>DroVir_CAF1 1 93 + 1
---------------------------AGGCGUACUUGCUGAAUAUACCUUCGUGGGACUGGAAGCAGGGCGAUGAUGUCAUUUGCUUGGCCGAGCUGAAGUUGGGUUUUAUAGCGCAGA
---------------------------.(((((..(((((.......(((....))).(((....))))))))..)))))....(((.((((.(((....))).))))....)))..... ( -26.40)
>DroGri_CAF1 1 93 + 1
---------------------------AGGCGUACUUGCUGAACAUACCAUCGUGGGACUGGAAACAGGGAGAUGAUGUCAUUUGCCUGGCCGAGUUGAAGUUGGGCUUUAUAGCGCAGA
---------------------------..((((....(((.(((...((.....))((((((...((((.(((((....))))).)))).)).))))...))).)))......))))... ( -31.50)
>DroSim_CAF1 1 109 + 1
-----------UCCUAUAAUAACUCCUAGGCGUACUUGCUGAACAUACCAUCGUGGGAUUGGAAACAGGGCGACGAUGUCAUCUGCCUGGCCGAACUGAAGCUGGGCUUCAUUGCCCAGA
-----------..............((((((((.(.....).))....((((((.(..(((....)))..).))))))......))))))...........((((((......)))))). ( -35.40)
>DroYak_CAF1 1 106 + 1
--------------UAUGAUAAUUCCUAGGCGUACUUGCUGAACAUACCAUCGUGGGACUGGAAACAGGGCGACGAUGUCAUCUGCCUGGCCGAACUCAAGCUGGGCUUCAUUGCCCAGA
--------------..(((......((((((((.(.....).))....((((((.(..(((....)))..).))))))......))))))......)))..((((((......)))))). ( -39.30)
>DroMoj_CAF1 1 93 + 1
---------------------------AGGCGUACUUGCUGAACAUCCCGUCGUGGGACUGGAAACAAGGUGACGAUGUUAUUUGCCUGGCCGAGCUGAAGUUGGGCUUCAUAGCGCAGA
---------------------------..((((....((..((((((..(((....)))((....)).(....)))))))....))..((((.(((....))).)))).....))))... ( -27.90)
>consensus
___________________________AGGCGUACUUGCUGAACAUACCAUCGUGGGACUGGAAACAGGGCGACGAUGUCAUCUGCCUGGCCGAACUGAAGCUGGGCUUCAUAGCCCAGA
............................((((....))))........((((((.(..(((....)))..).))))))......(((..((.........))..)))............. (-23.50 = -22.95 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:19 2006