| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,513,515 – 20,513,634 |
| Length | 119 |
| Max. P | 0.998474 |
| Location | 20,513,515 – 20,513,634 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 95.52 |
| Mean single sequence MFE | -39.23 |
| Consensus MFE | -36.43 |
| Energy contribution | -37.18 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.93 |
| SVM decision value | 3.11 |
| SVM RNA-class probability | 0.998474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20513515 119 + 27905053 AAAUAGCAAAGAGCCUGAUCUGGAGCUAGAGGGACUGCUGAAGCGUCACUAUACCACAGUGGCCUUUUUUCAGGGCACUAUGAUGAACGCAGUCGACCUGGAGCGAGUCAAGGUACACA ..........(.((((((.((.(..((((.(.((((((.....(((((.........((((.(((......))).)))).)))))...))))))..)))))..).)))).)))).)... ( -35.10) >DroVir_CAF1 75883 119 + 1 AAAUAGCAAAGAGCCCGACCUGGAGCUAGAGGGACUGCUGAAGCGCCACUAUACAACAGUGGCGUUUUUUCAGGGCACUAUGAUGAACGCAGUCGAUCUGGAACGAGUCAAGGUACACA ..........(.(((.(((.((...(((((..((((((.(((((((((((.......)))))))))))((((...(.....).)))).))))))..)))))..)).)))..))).)... ( -40.90) >DroGri_CAF1 80845 119 + 1 AAAUAGCAAAGAGCCUGACCUGGAGCUAGAGGGACUGCUGAAGCGCCACUAUACAACAGUGGCGUUUUUUCAGGGCACUAUGAUGAACGCAGUCGAUCUGGAACGAGUCAAGGUACACA ..........(.(((((((.((...(((((..((((((.(((((((((((.......)))))))))))((((...(.....).)))).))))))..)))))..)).))).)))).)... ( -43.60) >DroSec_CAF1 60431 119 + 1 AAAUAGCAAAGAGCCUGAUCUGGAGCUAGAGGGACUGCUGAAGCGUCACUAUACCACAGUGGCCUUUUUUCAGGGCACUAUGAUGAACGCAGUCGACCUGGAGCGAGUCAAGGUACACA ..........(.((((((.((.(..((((.(.((((((.....(((((.........((((.(((......))).)))).)))))...))))))..)))))..).)))).)))).)... ( -35.10) >DroWil_CAF1 72244 119 + 1 AAAUAGCAAAGAGCCUGAUCUGGAGCUAGAAGGACUGCUGAAGCGUCACUAUACCACAGUGGCGUUUUUUCAGGGCACUAUGAUGAAUGCAGUCGAUCUGGAGCGAGUCAAGGUACACC ..........(.((((((.((.(..(((((..((((((.(((((((((((.......)))))))))))((((...(.....).)))).))))))..)))))..).)))).)))).)... ( -39.80) >DroMoj_CAF1 76904 119 + 1 AAAUAGCAAAGAGCCCGACCUGGAGCUAGAGGGACUGCUGAAGCGCCACUAUACAACAGUGGCGUUUUUUCAGGGCACAAUGAUGAACGCAGUCGAUCUGGAACGAGUCAAGGUACACA ..........(.(((.(((.((...(((((..((((((.(((((((((((.......)))))))))))((((...(.....).)))).))))))..)))))..)).)))..))).)... ( -40.90) >consensus AAAUAGCAAAGAGCCUGACCUGGAGCUAGAGGGACUGCUGAAGCGCCACUAUACAACAGUGGCGUUUUUUCAGGGCACUAUGAUGAACGCAGUCGAUCUGGAACGAGUCAAGGUACACA ..........(.((((...((.(..(((((..((((((.(((((((((((.......)))))))))))((((...(.....).)))).))))))..)))))..).))...)))).)... (-36.43 = -37.18 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:18 2006