Locus 7653

Sequence ID 3R_DroMel_CAF1
Location 20,512,931 – 20,513,046
Length 115
Max. P 0.515467
window12355

overview

Window 5

Location 20,512,931 – 20,513,046
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.92
Mean single sequence MFE -27.73
Consensus MFE -18.62
Energy contribution -19.15
Covariance contribution 0.53
Combinations/Pair 1.15
Mean z-score -1.15
Structure conservation index 0.67
SVM decision value -0.04
SVM RNA-class probability 0.515467
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20512931 115 - 27905053
GGCUAA--UUGGAUUCUG---GAUGGACUUACCGAUGGAGAAAGACCACUUCGACAUCGACAUCCUCCCGAUCUUCGUGGAGGAAGUCCUUCAGGAAAUGCGACACGGAUUCGUAUGUUA
......--.....(((((---((.(((((...(((((..(((.......)))..)))))...((((((((.....)).)))))))))))))))))).((((((.......)))))).... ( -39.70)
>DroVir_CAF1 75365 104 - 1
---------------CAAAAAGGC-AACUUACCGAUGUAAAAAGACUACUUCGACAUCGACAUCCUCACGAUCUUCGUGCAGAAAGUCCUUCAGGAAAUGCGACACGGACUCGUAUGUUA
---------------....(((..-..)))..((((((...(((....)))..))))))((((....((((..((((((..(....(((....)))....)..)))))).)))))))).. ( -25.60)
>DroGri_CAF1 80299 98 - 1
---------------------GAU-AACUUACCGAUGUAAAAAGACUACUUCGACAUCGACAUCUUCACGAUCUUCGUGCAGAAAGUCCUUCAGGAAAUGCGACACGGAUUCGUAUGUUA
---------------------..(-(((....((((((...(((....)))..))))))........((((..((((((..(....(((....)))....)..)))))).))))..)))) ( -23.50)
>DroWil_CAF1 71664 98 - 1
----------------------AACCACUUACCGAUGUAAAAAUACAACUUCGACAUCGACAUCUUCGCGAUCUUCAUGGAGAAAGUCCUUGAGAAAAUGUGACACGGACUCGUAUGUUA
----------------------..........((((((..((.......))..))))))((((....((((((((....))))..((((.((...........)).)))))))))))).. ( -16.80)
>DroMoj_CAF1 76310 117 - 1
AGGAAA--UCGGGAUCAGAAAGCA-AACUUACCGAUGUAAAAAGACUACUUCGACGUCGACAUCCUCACGAUCUUCGUGCAGAAAGUCCUUCAGGAAAUGCGACACGGACUCGUAUGUUA
((((..--((((............-......))(((((...(((....)))..)))))))..)))).((((..((((((..(....(((....)))....)..)))))).))))...... ( -25.57)
>DroAna_CAF1 62399 117 - 1
AUUUGAAAGAGUGUUCGU---GAUGGACUUACCGAUGGAGAAAGACCACUUCGACAUCGACGUCCUCCCGAUCUUCGUGGAGAAAGUCCUUCAGGAAAUGCGACACGGACUCGUACGUUA
((((....)))).(((.(---((.((((((..(((((..(((.......)))..))))).....((((((.....)).)))).)))))).))).))).(((((.......)))))..... ( -35.20)
>consensus
_______________C_____GAU_AACUUACCGAUGUAAAAAGACUACUUCGACAUCGACAUCCUCACGAUCUUCGUGCAGAAAGUCCUUCAGGAAAUGCGACACGGACUCGUAUGUUA
................................((((((...(((....)))..))))))((((....((((..((((((..(....(((....)))....)..)))))).)))))))).. (-18.62 = -19.15 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:17 2006