Locus 7650

Sequence ID 3R_DroMel_CAF1
Location 20,495,430 – 20,495,550
Length 120
Max. P 0.721344
window12349

overview

Window 9

Location 20,495,430 – 20,495,550
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 92.67
Mean single sequence MFE -41.14
Consensus MFE -34.60
Energy contribution -33.75
Covariance contribution -0.85
Combinations/Pair 1.22
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value 0.40
SVM RNA-class probability 0.721344
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20495430 120 - 27905053
UUUCGCUUCUGUCAUAAAGGUGCCCUCGAACUCCUGUUUGUUGCGGGAUGCCUUCUGCUCCUUCUGCUUGGGGUCGUUGGGCCCCAGGUCCGGCUCCUUGCGGCAGCAAACGAAUGCGAA
.((((((((.......(((((((((.(((((....)))))....))).)))))).((((((....((((((((((....))))))))))...((.....)))).))))...))).))))) ( -45.90)
>DroVir_CAF1 51157 120 - 1
UUUUGCUUCUGUCAUAAAUGUUCCCUCGAACUCCUGUUUGUUACGUGACGCCUUCUGCUCCUUUUGCUUGGGAUCGUUGGGUCCCAGGUCCGGCUCCUUGCGGCAGCAGAUGAAUGCAAA
.((((((((.(((((....((.....(((((....)))))..)))))))....((((((((....((((((((((....))))))))))...((.....)))).)))))).))).))))) ( -40.00)
>DroGri_CAF1 58688 120 - 1
UUUUGCUUCUGUCAUAAAUGUUCCCUCGAACUCCUGUUUGUUGCGCGACGCCUUCUGCUCCUUCUGUUUGGGAUCGUUGGGUCCCAGAUCCGGCUCCUUGCGGCAGCAGAUGAAUGCAAA
.((((((((..........((((....))))....(((((((((((((.(((.............((((((((((....))))))))))..)))...)))).)))))))))))).))))) ( -36.26)
>DroWil_CAF1 48931 120 - 1
UUUUGCUUCUGUCAUAAAUGUUCCCUCGAACUCCUGUUUGUUGCGCGACGCCUUCUGCUCCUUUUGUUUGGGAUCGUUGGGUCCCAGAUCCGGCUCCUUGCGGCAACAUAUGAAGGCAAA
.(((((((...(((((...((((....)))).......((((((((((.(((.............((((((((((....))))))))))..)))...)))).)))))))))))))))))) ( -36.06)
>DroMoj_CAF1 52682 120 - 1
UUUUGCUUCUGUCAUAAAUGUUCCCUCGAACUCUUGUUUGUUGCGUGACGCCUUCUGCUCCUUUUGUUUGGGAUCGUUGGGUCCCAGGUCCGGCUCCUUGCGGCAGCAGAUGAAUGCAAA
.((((((((.(((((....((.....(((((....)))))..)))))))....((((((((.....(((((((((....)))))))))....((.....)))).)))))).))).))))) ( -36.70)
>DroAna_CAF1 45275 120 - 1
UUUUGCUUCUGUCAUAAAGGUGCCCUCGAACUCCUGUUUGUUGCGGGAGGCCUUCUGCUCCUUCUGCUUGGGGUCGUUGGGCCCCAGGUCGGGCUCCUUGCGGCAGCAGAUGAACGCAAA
.((((((.((((....((((.((((..(..(((((((.....)))))))..).............((((((((((....)))))))))).)))).)))))))).)))))).......... ( -51.90)
>consensus
UUUUGCUUCUGUCAUAAAUGUUCCCUCGAACUCCUGUUUGUUGCGCGACGCCUUCUGCUCCUUCUGCUUGGGAUCGUUGGGUCCCAGGUCCGGCUCCUUGCGGCAGCAGAUGAAUGCAAA
.((((((((..........((((....))))....(((((((((....(((.....(((......((((((((((....))))))))))..))).....))))))))))))))).))))) (-34.60 = -33.75 +  -0.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:11 2006