Locus 7649

Sequence ID 3R_DroMel_CAF1
Location 20,492,904 – 20,493,013
Length 109
Max. P 0.756212
window12348

overview

Window 8

Location 20,492,904 – 20,493,013
Length 109
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.96
Mean single sequence MFE -33.05
Consensus MFE -20.40
Energy contribution -21.48
Covariance contribution 1.09
Combinations/Pair 1.09
Mean z-score -1.72
Structure conservation index 0.62
SVM decision value 0.49
SVM RNA-class probability 0.756212
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20492904 109 - 27905053
GUGUAUAGGUGGGCGGGAGGCAGGUUAACGUGAACGUUAACGUUACUGCCAUUGCUUCAGUUAACUCGGGCGAGUCACGCCAUGCCGCCAGUUAGCUGUCGUUUCAUAA
..((((.(((((((....((((((((((((....)))))))....))))).(((((..((....))..)))))))).))))))))((.(((....))).))........ ( -38.50)
>DroPse_CAF1 45681 98 - 1
-----AAAGAGGGUGGUGGCUAGGUUAACCUGAACGUUAACGUUACUGCCA------CAGUUAACUCGAGCUAGUCACGCCAUGUCGCCAGUUAGCUGUCGUUUCAUAA
-----......((((.(((((((((((((......))))))(((((((...------))).)))).....)))))))))))(((.((.(((....))).))...))).. ( -28.50)
>DroSec_CAF1 39956 91 - 1
GUGUA--------------GCAGGUUAACGUGAACGUUAACGUUACUAAAAUUGCUU----UAACUCGGGCGAGUCACGCCAUGCCGCCAGUUAGCUGUCGUUUCAUAA
..(((--------------((..(((((((....))))))))))))..((((.((.(----(((((..((((.((........))))))))))))..)).))))..... ( -23.80)
>DroSim_CAF1 43788 96 - 1
GUGUCU-------------CCAGGUUAACGUGCACGUUAACGUUACUGCCAUUGCUUCAGUUAACUCGGGCGAGUCACGCCAUGCCGCCAGUUAGCUGUCGUUUCAUAA
......-------------...(((((((((........))))))..)))...((..(((((((((..((((.((........)))))))))))))))..))....... ( -26.60)
>DroEre_CAF1 40367 97 - 1
GUG------------GGCGGCAGGUUAACGUGAACGUUAACGUUACUGCCAUUGCCACAGUUAACUCGGGCGAGUCACGCCAUGCCGCCAGUUAGCUGUCGUUUCAUAA
(((------------(((((((((((((((....)))))))....)))))...)))((((((((((..((((.((........)))))))))))))))).....))).. ( -38.80)
>DroAna_CAF1 43063 103 - 1
AAGGUAUGG------UGUGGCAGGUUAACGGGAACGUGAACGUUAACGUUACUGCUACAGCUAACUCGGGCGAGUCACGCCAUGCCGCCAGUUAGCUGUCGUUUCAUAA
..(((((((------((((((((..(((((..((((....))))..)))))))))........((((....)))))))))))))))(.(((....))).)......... ( -42.10)
>consensus
GUGU___________GG_GGCAGGUUAACGUGAACGUUAACGUUACUGCCAUUGCUUCAGUUAACUCGGGCGAGUCACGCCAUGCCGCCAGUUAGCUGUCGUUUCAUAA
.......................(((((((....)))))))................(((((((((..((((.((........)))))))))))))))........... (-20.40 = -21.48 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:09 2006