Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 20,491,572 – 20,491,666 |
Length | 94 |
Max. P | 0.928065 |
Location | 20,491,572 – 20,491,666 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 85.96 |
Mean single sequence MFE | -32.58 |
Consensus MFE | -25.72 |
Energy contribution | -25.76 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.79 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20491572 94 + 27905053 AAUGUCCGAUGGGAAAGCGAAAAGACAUGGGGGA--UU-GGG----GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA (((.(((.(((..............))).))).)--))-.((----....)).((((((((((......((.(((.......)))))...)))))))))). ( -36.54) >DroSec_CAF1 38421 95 + 1 AAUGUCCGAUGGGAAAGCGAAAAGA--UGGGGGAACUUGGGG----GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA ....(((....)))...........--.(((....)))..((----....)).((((((((((......((.(((.......)))))...)))))))))). ( -32.90) >DroSim_CAF1 42490 95 + 1 AAUGUCCGAUGGGAAAGCGAAAAGA--UGGGGGCAUUUGGGG----GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA (((((((..................--...)))))))...((----....)).((((((((((......((.(((.......)))))...)))))))))). ( -34.70) >DroEre_CAF1 39037 85 + 1 AAUGUCCGAUGGGAAAGAGAAAAUAG-CGGAGG---------------GACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA ..(.((((..................-)))).)---------------.....((((((((((......((.(((.......)))))...)))))))))). ( -27.87) >DroYak_CAF1 39063 99 + 1 AAUGUUCGAUGGGCAAGAGA-AAUAG-AGGAGGAAGAGGGUGGUCAGUGGCCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA ..((((.....)))).....-.....-.............((((.....))))((((((((((......((.(((.......)))))...)))))))))). ( -30.90) >consensus AAUGUCCGAUGGGAAAGCGAAAAGA__UGGGGGAA_UUGGGG____GAGACCAGUGGCCGGCAAUCAACGGACCCAAUCAGCGGGCCAAGUGCUGGCCAUA ....(((....))).......................................((((((((((......((.(((.......)))))...)))))))))). (-25.72 = -25.76 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:08 2006