| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,482,879 – 20,482,969 |
| Length | 90 |
| Max. P | 0.730435 |
| Location | 20,482,879 – 20,482,969 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.87 |
| Mean single sequence MFE | -36.08 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.10 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.730435 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20482879 90 - 27905053 GUGGUGGCUCUACCACUUGUGGUUGCACAGCAACGGG---UGCGGUAGCUGUGAGUGCUUG---------GUUUACAUUGAGCAUUCGCGCAGGUAUUGGAU ..((((....))))((((((((((((...(((.....---))).))))))(((((((((..---------((....))..)))))))))))))))....... ( -34.80) >DroSec_CAF1 29807 90 - 1 GUGGUGGCUCUACCACUUGUGGUUGCACAGCUACGGG---UGCGGUAGCUGUGAGUGCUUG---------GCUUACAUUGAGCAUUCGCGCAGAUAUGGGAU .(((((....)))))((..((.((((((((((((...---....))))))))(((((((..---------(......)..)))))))..)))).))..)).. ( -36.20) >DroSim_CAF1 29923 90 - 1 GUGGUGGCUCUACCACUUGUGGUUGCACAGCUACUGG---UGCGGUAGCUGUGAGUGCUUG---------GCUUACAUUGAGCAUUCGCGCAGGUAUGGGAU .(((((....)))))((..((.((((((((((((((.---..))))))))))(((((((..---------(......)..)))))))..)))).))..)).. ( -40.40) >DroEre_CAF1 30124 90 - 1 GUGGUGGCUCUACCACUUGUGGUUGCACAGCAGCGGG---AGCGGAAGCUGUGAUGGGUUG---------GCUUAGAUUGAGCACUCGCGCAGGUAUGGGAU .(((((....)))))((..((.(((((((((.((...---.))....)))))(.(((((..---------((((.....)))))))))))))).))..)).. ( -31.00) >DroYak_CAF1 30114 90 - 1 GUGGUGGCUCUACCACUUGCGGUUGCACAGCCGCAGG---AGCGGUAGUUGUGACGGCUUG---------GUUUAGAUUGAGCACUCGCGCAGGUAUGGGAU ..((((....))))(((((((((..(((.(((((...---.))))).).))..)).(((..---------((....))..))).....)))))))....... ( -35.00) >DroPer_CAF1 35800 102 - 1 GCGGUGCCUCCACCACCUGCGGUAGGGCGGGUACGGGAACUGCGGGAGCUACGGGAGCUGGAGUCGUCGUGGUCAAGCCGAGGACUCGCGUGGGCAACGGAU .((.(((((((...((((((......))))))...)))...((...((((.....)))).(((((.(((.(......)))).)))))))...)))).))... ( -39.10) >consensus GUGGUGGCUCUACCACUUGUGGUUGCACAGCUACGGG___UGCGGUAGCUGUGAGUGCUUG_________GCUUACAUUGAGCACUCGCGCAGGUAUGGGAU ..((((....))))(((((((....((((((.((.(......).)).)))))).................((((.....)))).....)))))))....... (-21.32 = -21.10 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:06 2006