Locus 7645

Sequence ID 3R_DroMel_CAF1
Location 20,481,121 – 20,481,231
Length 110
Max. P 0.805343
window12344

overview

Window 4

Location 20,481,121 – 20,481,231
Length 110
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 71.80
Mean single sequence MFE -35.17
Consensus MFE -13.75
Energy contribution -13.25
Covariance contribution -0.50
Combinations/Pair 1.37
Mean z-score -2.02
Structure conservation index 0.39
SVM decision value 0.63
SVM RNA-class probability 0.805343
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20481121 110 - 27905053
----------GUUUUAUGCUCUAAAUGAAUAUCACUUGCAUGAUUGCGGCUCCAUCGCCGGCGGCGGCCACCGCGGGAUCCAAGUAGAUCUUGCUUCGCCGGCCAUGCAGUUGCAGAAAC
----------...((((((..................))))))((((((((.(((.((((((((.((...))((((((((......)))))))).)))))))).))).)))))))).... ( -43.57)
>DroVir_CAF1 35235 119 - 1
AUUUAGGUAUAU-UUAUAUCUGGAUUCAAUAUCACUUGCAUGAUUGCGUCGCCAUCACCGGCGGCCGCUACAGCUGGGUCCAAAUAAAUUUUGCUCCGUCUGCCGUGCAAUUGUAGAAAC
((((((((((..-..)))))))))).......((.(((((((...((((((((......))))).)))..(((.((((..((((.....)))).)))).))).))))))).))....... ( -34.30)
>DroPse_CAF1 32891 111 - 1
A---AAGCAAAUUUUAAACUC------AAUAUCACUUGCAUGAUGGCGGCACCAUCGCCCGCUGCCGCUACCGCUGGGUCCAGGUAAAUCUUGCUCCGCCUGCCAUGAAGCUGCAGGAAC
.---.................------.......((((((.(.((((((((.(.......).)))))))).)(((.((..(((((............)))))))....)))))))))... ( -29.60)
>DroGri_CAF1 40381 117 - 1
AUUUA--UAUAG-UUAAAGCGGCACUCAAUAUGACUUGCAUGAUUGCGUCUCCAUCGCCAGCGGCUGCGACGGCCGGAUCUAAAUAGAUUUUACUUCGCCGGCCGUGCAGCUGCAGGAAU
.....--.....-.......(((.........(((..(((....))))))......))).((((((((.((((((((...((((.....)))).....))))))))))))))))...... ( -41.86)
>DroWil_CAF1 34149 110 - 1
----------AUAUUUUGUCUGGAUUCAAUAUCACUUGCAUGAUCGCGGCUCCAUCGCCGGCAGCAGCUACUGCUGGAUCCAAAUAUAUUUUACUUCUUCUUCCAUGAAGCUGUAGAAAU
----------......(((.((((((((..................((((......))))((((......)))))))))))).)))..((((((..((((......))))..)))))).. ( -30.30)
>DroAna_CAF1 31294 109 - 1
----------GU-UCAAACUCAAACUCAAUAUCACUUGCAUGAUAGCGGCUCCAUCGCCAGCGGCAGCCACAGAGGGGUCCAAAUAGAUUUUGCUCCGGCGGCCAUGAAGCUGCAAGAAC
----------((-((..............(((((......)))))((((((.(((.(((..(((.(((......((((((......))))))))))))..))).))).))))))..)))) ( -31.40)
>consensus
__________AU_UUAAACCCGAACUCAAUAUCACUUGCAUGAUUGCGGCUCCAUCGCCGGCGGCAGCUACAGCUGGAUCCAAAUAGAUUUUGCUCCGCCGGCCAUGAAGCUGCAGAAAC
.............................................((((((.(((.((..((....))........((..((((.....))))..))....)).))).))))))...... (-13.75 = -13.25 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:51:06 2006