Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,671,326 – 2,671,418 |
Length | 92 |
Max. P | 0.619979 |
Location | 2,671,326 – 2,671,418 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 68.15 |
Mean single sequence MFE | -17.56 |
Consensus MFE | -10.47 |
Energy contribution | -10.55 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -1.38 |
Structure conservation index | 0.60 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2671326 92 + 27905053 AGCUUGUGUGCAUGUAAACACGCCGCU-CUAGAACCACAAUCUGCGGUACGCACGAGUUUAAGUC--UCAA-----------AAA--AAAAAAAAAC----AACA-------AAAAUGA ((((((((((..((....)).(((((.-..(((.......)))))))).))))))))))......--....-----------...--..........----....-------....... ( -18.00) >DroVir_CAF1 30839 77 + 1 AGCUCGUGUAUAUGUAAACAUGCCGCUUCUAAAAACU------GCCACAGGC-------CAGCGC--UCGA-----------GC------AGAGACC---CAAGA-------GACGAGA ..(((((.(.((((....)))).............((------((..(..((-------....))--..).-----------))------)).....---....)-------.))))). ( -14.50) >DroSec_CAF1 30829 89 + 1 AGCUUGUGUGCAUGUAAACACGCCGCU-CUAGAACCUCAAUCUGCGGUACGCACGAGUUCAACUC--UUAA-----------AAA--A--AAAGAAC----AACA-------AA-AAGA ((((((((((..((....)).(((((.-..(((.......)))))))).))))))))))....((--((..-----------...--.--.))))..----....-------..-.... ( -18.40) >DroSim_CAF1 23910 88 + 1 AGCUUGUGUGCAUGUAAACACGCCGCU-CUAGAACCUCAAUCUGCGGUACGCACGAGUUCAACUC--UUAA-----------AA------AAAGAAC----AACA-------AAAAAGA ((((((((((..((....)).(((((.-..(((.......)))))))).))))))))))....((--((..-----------..------.))))..----....-------....... ( -18.70) >DroAna_CAF1 18552 115 + 1 AGCCUGUGUGCAUGUAAACACGCCGCU-CUAGAACCUCAAUCUGCGGUACGCACGCUCACAACUCCCUCAAAAAAAAAAUAAAAUGAA--AAUGAAAGGA-AACAAAGUCACAAAAACA .....((((((.((....)).(((((.-..(((.......))))))))..))))))................................--..(((..(..-..)....)))........ ( -18.20) >consensus AGCUUGUGUGCAUGUAAACACGCCGCU_CUAGAACCUCAAUCUGCGGUACGCACGAGUUCAACUC__UCAA___________AA___A__AAAGAAC____AACA_______AAAAAGA .((..((((........))))(((((.................)))))..))................................................................... (-10.47 = -10.55 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:32 2006