Locus 7637

Sequence ID 3R_DroMel_CAF1
Location 20,452,602 – 20,452,722
Length 120
Max. P 0.512258
window12329

overview

Window 9

Location 20,452,602 – 20,452,722
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.10
Mean single sequence MFE -29.06
Consensus MFE -18.68
Energy contribution -18.72
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.92
Structure conservation index 0.64
SVM decision value -0.04
SVM RNA-class probability 0.512258
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20452602 120 - 27905053
AACAAAGUUCAAGCGAACGUGCUCGAUGGAGAGCGCGAUAGAUAAAAGACUACUGACAGUCUGGCCCCCAAAAUUGUGUAAUAAAUUGAGGGAUCCAUAGCGAAUGGAUCUACCAACAGA
......((((....))))((((((......))))))................((((((((.(((...)))..)))))........(((..((((((((.....))))))))..)))))). ( -31.40)
>DroSec_CAF1 35826 106 - 1
AACGAAGUUCAAUCGAACG--------------CGCGAUAGAUAAAAGACUACUGACAGUCUGGCCCCCAAAAUUGUGUAAUAAAUUGAGGGAUCCAUGGUGAAUGGAUCUACCAACAGA
......((((....))))(--------------((((((.......(((((......)))))((...))...)))))))......(((..((((((((.....))))))))..))).... ( -26.20)
>DroSim_CAF1 35686 106 - 1
AACAAAGUUCAAUCGAACG--------------CGCGAUAGAUAAAAAACUACUGACAGUCUGGCCCCCAAAAUUGUGUAAUAAAUUGAGGGAUCCAUGGCGAAUGGAUCUACCCACAGA
........((.((((....--------------..)))).))..........(((...((((((..(((..((((........))))..)))..))).)))...(((......)))))). ( -20.90)
>DroEre_CAF1 34626 118 - 1
AACAAAGUUCAAUCGAACGUGCGCGAUAAAGA--GCGAAAGAUAAAAGACUAUUGACAGUCUGGGCUCCAAGAUUGUGUAAUAAAUUGAGGGAUCCAUGGCGAAUGGAUCUCCUACCAGA
..(((.((((....)))).((((((((...((--((..........(((((......)))))..))))....)))))))).....)))((((((((((.....))))))).)))...... ( -33.30)
>DroYak_CAF1 36990 118 - 1
AACAAAGUUCAAUCGAACGUGCUCGAUAAAGA--GCGAAAGAUAAAAGACUACUGACAGUCUGGCCCCCAAGAUUGUGUAAUAAACUGAGGGAUCCAUGGCGAAUGGAUCUCCUACCAGA
......((((....)))).(((((......))--)))...............((((((((((((...)).)))))))...........((((((((((.....))))))).)))..))). ( -33.50)
>consensus
AACAAAGUUCAAUCGAACGUGC_CGAU__AGA_CGCGAUAGAUAAAAGACUACUGACAGUCUGGCCCCCAAAAUUGUGUAAUAAAUUGAGGGAUCCAUGGCGAAUGGAUCUACCAACAGA
.((((.((((....))))............................(((((......)))))...........)))).............((((((((.....))))))))......... (-18.68 = -18.72 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:51 2006