Locus 7636

Sequence ID 3R_DroMel_CAF1
Location 20,452,306 – 20,452,412
Length 106
Max. P 0.989806
window12328

overview

Window 8

Location 20,452,306 – 20,452,412
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 97.55
Mean single sequence MFE -16.32
Consensus MFE -14.98
Energy contribution -14.98
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.92
SVM decision value 2.18
SVM RNA-class probability 0.989806
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20452306 106 + 27905053
GACUAAUAAUGCAUGUAACCGCAUCUAGGCUGCUGCCAACAAUUUCCCUAAUUAAUUCUUAAACAACAUAACAAACAAUAGAUGCAAUGCAAGACCUUUAAACUGA
.........(((((......((((((((((....)))...((((.....)))).........................))))))).)))))............... ( -17.00)
>DroSec_CAF1 35530 106 + 1
GACUAAUAAUGCAUGUAACCGCAUCUAGGCUGCUGCCAACAAAUUCCCUAAUUAAUUCUUAAACAACAUAACAAACAAUAGAUGCAAUGCAAGACCUUUAAACUGA
.........(((((......((((((((((....)))....((((....)))).........................))))))).)))))............... ( -16.20)
>DroSim_CAF1 35389 106 + 1
GACUAAUAAUGCAUGUAACCGCAUCUAGGCUGCUGCCAACAAAUUCCCUAAUUAAUUCUUAAACAACAUAACAAACAAUAGAUGCAAUGCAAGACCUUUAAACUGA
.........(((((......((((((((((....)))....((((....)))).........................))))))).)))))............... ( -16.20)
>DroEre_CAF1 34343 105 + 1
GACUAAUAAAGCAUGUAACAGCAUCUAGGCUGCUGCCAACAAAU-CCCCAAUUAAUUCUUAAACAACAUAACAAACAAUAGAUGCAAUGCAAGACCUUUAAACUGA
......(((((..((((...((((((((((....))).......-......(((.....)))................)))))))..))))....)))))...... ( -15.60)
>DroYak_CAF1 36697 106 + 1
GACUAAUAAAGCAUGUAACCGCAUCUAGGCUGCUGCCAACAAAUUCCCUAAUUAAUUCUUAAACAACAUAACGAACAAUAGAUGCAAUGCAAGACCUUUAAACUGA
......(((((..((((...((((((((((....)))..................((((((.......))).)))...)))))))..))))....)))))...... ( -16.60)
>consensus
GACUAAUAAUGCAUGUAACCGCAUCUAGGCUGCUGCCAACAAAUUCCCUAAUUAAUUCUUAAACAACAUAACAAACAAUAGAUGCAAUGCAAGACCUUUAAACUGA
..........((((......((((((((((....)))..............(((.....)))................))))))).))))................ (-14.98 = -14.98 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:50 2006