Locus 7635

Sequence ID 3R_DroMel_CAF1
Location 20,451,860 – 20,451,978
Length 118
Max. P 0.663052
window12327

overview

Window 7

Location 20,451,860 – 20,451,978
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 98.81
Mean single sequence MFE -31.94
Consensus MFE -30.26
Energy contribution -30.42
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.30
Structure conservation index 0.95
SVM decision value 0.27
SVM RNA-class probability 0.663052
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20451860 118 + 27905053
CCCAUUUGCUCGGAAUGUAUACACAUUUCAGUGACUUCAAUUGUUCGUCGUCAUUUCACCUUGAAUUGCGGGCAAGGUAAGCGUCCAAAAGUCGCUAUGGAUAUCGUUGCGCUUCAUU
.((((......(((((((....)))))))((((((((...((((((((..(((........)))...))))))))((.......))..)))))))))))).................. ( -29.50)
>DroSec_CAF1 35132 118 + 1
CCCAUUUGCGCGGAAUGUAUACACAUUUCAGUGACUUCAAUUGUUCGUCGUCAUUUCACCUUGAAUUGCGGGCAAGGUAAGCGUCCAAAAGUCGCUAUGGAUAUCGUUGCGCUUCAUU
.......(((((((((((....)))))))((((((((...((((((((..(((........)))...))))))))((.......))..))))))))............))))...... ( -33.90)
>DroSim_CAF1 35000 118 + 1
CCCAUUUGCGCGGAAUGUAUACACAUUUCAGUGACUUCAAUUGUUCGUCGUCAUUUCACCUUGAAUUGCGGGCAAGGUAAGCGUCCAAAAGUCGCUAUGGAUAUCGUUGCGCUUCAUU
.......(((((((((((....)))))))((((((((...((((((((..(((........)))...))))))))((.......))..))))))))............))))...... ( -33.90)
>DroEre_CAF1 33918 118 + 1
CCCAUUUGCGCGGAAUGUAUACACAUUUCAGUGACUUCAAUUGUUCGUCGUCAUUUCACCUUGAAUUGUGGGCAAGGUAAGCGUCCAAAAGUCGCUAUGGAUAUCGUUGCGCUUCAUU
.......(((((((((((....)))))))((((((((...(((..(((.(......)((((((.........))))))..)))..)))))))))))............))))...... ( -31.20)
>DroYak_CAF1 35439 118 + 1
CCCAUUUGCGCGGAAUGUAUACACAUUUCAGUGACUUCAAUUGUUCGUCGUCAUUUCACCUUGAAUUGUGUGCAAGGUAAGCGUCCAAAAGUCGCUAUGGAUAUCGUUGCGCUUCAUU
.......(((((((((((....)))))))((((((((...(((..(((.(......)((((((.........))))))..)))..)))))))))))............))))...... ( -31.20)
>consensus
CCCAUUUGCGCGGAAUGUAUACACAUUUCAGUGACUUCAAUUGUUCGUCGUCAUUUCACCUUGAAUUGCGGGCAAGGUAAGCGUCCAAAAGUCGCUAUGGAUAUCGUUGCGCUUCAUU
.......(((((((((((....)))))))((((((((...((((((((..(((........)))...))))))))((.......))..))))))))............))))...... (-30.26 = -30.42 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:49 2006