Locus 7634

Sequence ID 3R_DroMel_CAF1
Location 20,447,515 – 20,447,617
Length 102
Max. P 0.957837
window12326

overview

Window 6

Location 20,447,515 – 20,447,617
Length 102
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 91.62
Mean single sequence MFE -13.17
Consensus MFE -12.79
Energy contribution -12.79
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.97
SVM decision value 1.48
SVM RNA-class probability 0.957837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20447515 102 - 27905053
UAAUAAAUGUAUA-UUCAAUGGAAUAUUCAACAACCAUUUUCUUAGAAAUUCCCACGUGUUACGAAACGCACUCCACAUCU----ACCAAUUGAAUACAAAAUAAGU-------
...........((-(((((((((((.(((................))))))))...(((((....)))))...........----....))))))))..........------- ( -13.29)
>DroSec_CAF1 30801 101 - 1
UAAUAAAUGUAUA-UUCAAUGGAAUAUUCAACAACCAUUUUCUUAGAAAUUCCCACGUGUUACGAAACGCACUCCACAUCU----ACCAAUUGAAUACAA-AUAAGU-------
...........((-(((((((((((.(((................))))))))...(((((....)))))...........----....))))))))...-......------- ( -13.29)
>DroSim_CAF1 30653 101 - 1
UAAUAAAUGUAUA-UUCAAUGGAAUAUUCAACAACCAUUUUCUUAGAAAUUCCCACGUGUUACGAAACGCACUCCACAUCU----ACCAAUUGAAUACAA-AUAAGU-------
...........((-(((((((((((.(((................))))))))...(((((....)))))...........----....))))))))...-......------- ( -13.29)
>DroEre_CAF1 29703 109 - 1
UUAUAAAUGUAUA-CUCAAUGGAAUAUUCAACACCCAUUUUCUUAGAAAUUCCCACGUGUUACGAAACGCACUCCAUAUCUAUGUACCAAUUGAAUACAA-AUACAUAAGU---
.......(((((.-.((((((((((.(((................))))))))...(((((....)))))...................)))))))))).-..........--- ( -13.19)
>DroYak_CAF1 31102 109 - 1
UAAUAAAUGUAUAAUUCAAUGGAAUAUUCAACACCCAUUUUCUUAGAAAUUCCCACGUGUUACGAAACGCACUCCACUUCU----ACCAAUUGAAUACAA-AUAAGUAAGUAGU
.......(((((...((((((((((.(((................))))))))...(((((....)))))...........----....)))))))))).-............. ( -12.79)
>consensus
UAAUAAAUGUAUA_UUCAAUGGAAUAUUCAACAACCAUUUUCUUAGAAAUUCCCACGUGUUACGAAACGCACUCCACAUCU____ACCAAUUGAAUACAA_AUAAGU_______
.......(((((...((((((((((.(((................))))))))...(((((....)))))...................))))))))))............... (-12.79 = -12.79 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:48 2006