Locus 7632

Sequence ID 3R_DroMel_CAF1
Location 20,445,395 – 20,445,486
Length 91
Max. P 0.920739
window12323

overview

Window 3

Location 20,445,395 – 20,445,486
Length 91
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 70.04
Mean single sequence MFE -37.73
Consensus MFE -17.39
Energy contribution -18.53
Covariance contribution 1.14
Combinations/Pair 1.20
Mean z-score -1.95
Structure conservation index 0.46
SVM decision value 1.14
SVM RNA-class probability 0.920739
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20445395 91 - 27905053
----------AGCGCCCGAUGGAUCCGUUUUCAGGGU------CAUAUGAAAGCGCUGGAUGUGAACGUCCAGUGC-CUUCUGGGCGGGAAACACAUGUGAGCACUGA
----------.(((((((...(((((.......))))------)....(((.((((((((((....))))))))))-.)))))))).(....)........))..... ( -41.10)
>DroSec_CAF1 27809 92 - 1
----------AGUACCCGAUGGAUCCGUUUUCAGGGU------CAUGUGAAUGCGCUGGAUGUGAACGUCCAGUGCCCUUUUGGGCGGGAAACACCUGUGAGCACUGA
----------(((.(((((..(((((.......))))------)........((((((((((....))))))))))....)))))((((.....)))).....))).. ( -34.60)
>DroEre_CAF1 27557 91 - 1
----------CGCAUCCGAGGGAUCCCUUUUCAGUGU------CAUGUGGAAGCGCUGGAUGUGAACGUCCAGUGC-CUUUUGGGCAGGGAACACCUGCGAGCACUGG
----------.......((((....))))..((((((------(....((((((((((((((....))))))))).-)))))..(((((.....))))))).))))). ( -40.60)
>DroYak_CAF1 28935 91 - 1
----------GGCAUCCAAAGGAUCCGUUUUCAAUGU------CAUGUGGAAGCGCUGAAUGUGAAUGUCCAGUGC-CUUUUGGGCGGGGAACACCUGUGAGCACUGG
----------((.((((...))))))...((((...(------((.(((....))))))...))))...(((((((-.((....(((((.....)))))))))))))) ( -29.60)
>DroMoj_CAF1 26348 98 - 1
GAGCAGCAU---CAGCUGGUGGCUCGGUGGGCAGUGG------CAUAUGGAAGCGCUGCAAGUGUAGAUCCAGAGC-ACGCUGCGAGGGCAACAGCUGCGAGCAUUGG
.....((..---((((((...((((.....(((((((------(...((((....((((....)))).))))..))-.))))))..))))..))))))...))..... ( -38.30)
>DroPer_CAF1 36398 100 - 1
-GCCCUUCUCUGCGCC------GCCCGUGUUGCUGGUGAUCUGCAUGUGGAAGCGCUGGAUGUGCAAGUCCAGGGC-UCGCUGGGCGGGAAACACCUGCGAGCACUGG
-((.(.(((..((((.------.(((((((..(....)....))))).))..)))).))).).))....((((.((-((((.((...(....).)).)))))).)))) ( -42.20)
>consensus
__________AGCACCCGAUGGAUCCGUUUUCAGGGU______CAUGUGGAAGCGCUGGAUGUGAACGUCCAGUGC_CUUCUGGGCGGGAAACACCUGCGAGCACUGG
...........................................((.(((...((((((((((....))))))))))........(((((.....)))))...))))). (-17.39 = -18.53 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:45 2006