Locus 7630

Sequence ID 3R_DroMel_CAF1
Location 20,439,846 – 20,439,946
Length 100
Max. P 0.704415
window12318

overview

Window 8

Location 20,439,846 – 20,439,946
Length 100
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 77.22
Mean single sequence MFE -26.27
Consensus MFE -16.31
Energy contribution -18.12
Covariance contribution 1.81
Combinations/Pair 1.17
Mean z-score -1.49
Structure conservation index 0.62
SVM decision value 0.36
SVM RNA-class probability 0.704415
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20439846 100 - 27905053
ACAGACGCAACGGACCG---CCGUCAAGUGUAAAUGACAAUCCGAGUAA--AUGCCGUCCGGCUGGAUCGGGCGGAUAUACUCGUACACACACAUAUAUAUAUAU
.((.((((.((((....---))))...))))...))......((((((.--((.((((((((.....)))))))))).))))))..................... ( -28.80)
>DroSec_CAF1 22225 90 - 1
ACAGACGCAACGGACCG---CCGUCAAGUGUAAAUGACAAUCCGAGUAA--AUGCCGUCCGGCUGGAUCGGGCGGAUAUACUCGUAC----------AUAUAUAU
.((.((((.((((....---))))...))))...))......((((((.--((.((((((((.....)))))))))).))))))...----------........ ( -28.80)
>DroSim_CAF1 21971 90 - 1
ACAGACGCAACGGACCG---CCGUCAAGUGUAAAUGACAAUCCGAGUAA--AUGCCGUCCGGCUGGAUCGGGCGGAUAUACUCGUAC----------AUAUAUAU
.((.((((.((((....---))))...))))...))......((((((.--((.((((((((.....)))))))))).))))))...----------........ ( -28.80)
>DroEre_CAF1 21998 89 - 1
ACAGACGCAACGGACCGCCGCCGUCAAGUGUAAAUGACAAUCCGAGUAA--AUGCCGUCCGGCUGGAUCGGGCGGAUAUA------------CUC--GUAUAUGU
.((.((((.((((.......))))...))))...))(((((.((((((.--((.((((((((.....)))))))))).))------------)))--).)).))) ( -28.90)
>DroYak_CAF1 23258 98 - 1
ACAGACGCAACGGACCG---CCGUCAAGUGUAAAUGACAAUCCGAGUAA--AUGCCGUCCGGCUGGAUCGGGCGGAUAUAGUCGAACUCGCACUC--GUAUAUAU
.((.((((.((((....---))))...))))...))......(((((..--...((((((((.....)))))))).....(.((....)))))))--)....... ( -27.10)
>DroAna_CAF1 22506 85 - 1
-CAAACAUCAGAGA------CCAUCAAGUGCAAAUGACAAUUGCAGCAAAAAUGCC---CCAAAAGAUGGGAUGUACGUACUCGGAG----------AUACAUGA
-...(((((.....------(((((...(((((.......)))))(((....))).---......)))))))))).((....))...----------........ ( -15.20)
>consensus
ACAGACGCAACGGACCG___CCGUCAAGUGUAAAUGACAAUCCGAGUAA__AUGCCGUCCGGCUGGAUCGGGCGGAUAUACUCGUAC__________AUAUAUAU
.((.((((.((((.......))))...))))...))......((((((......((((((((.....))))))))...))))))..................... (-16.31 = -18.12 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:41 2006