Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,670,254 – 2,670,351 |
Length | 97 |
Max. P | 0.553125 |
Location | 2,670,254 – 2,670,351 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.04 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -19.96 |
Energy contribution | -21.15 |
Covariance contribution | 1.19 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.69 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2670254 97 + 27905053 AGAGA-----GGGAGGGACAGACGUUGUCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCUUUCGGGAUCGAACUAAG ...((-----(((((.(((.(((((((((.......))))).)))).)))..((.(((((............)))))))..))))))).............. ( -25.20) >DroSec_CAF1 29767 95 + 1 AGAGA-----G-GAGGGACAGACGUUGUCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCU-UCGGGAUCGAACUCAG ...((-----(-....(((.(((((((((.......))))).)))).)))((.(((..(((((..(((((...)))))...))))-).))).))...))).. ( -26.50) >DroSim_CAF1 22845 95 + 1 AGAGA-----G-GAGGGACAGACGAUGCCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCU-UCGGGAUCGAACUCAG ...((-----(-....(((.(((((((((.......))).)))))).)))((.(((..(((((..(((((...)))))...))))-).))).))...))).. ( -29.90) >DroAna_CAF1 17651 92 + 1 -----AGAGGGGGAGGACCAGACGUCGUCUUAGAUUGGCGAUCGUCGGCCCAGCUCAUAAGAAAGCCAUAAAUUAUGGCAAUUCUUUCGGGG-----CCCGG -----...(((...((.((.(((((((((.......))))).)))))).))..(((..(((((.((((((...))))))..)))))..))).-----))).. ( -34.10) >consensus AGAGA_____G_GAGGGACAGACGUUGUCUUAGAUUGGCGAUCGUCGGUCGAGCUCAUAAGAAACCCAUAAAUUAUGGCAAUUCU_UCGGGAUCGAACUCAG ..............(((...(((((((((.......))))).))))..((((.(((...((((..(((((...)))))...))))...))).)))).))).. (-19.96 = -21.15 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:31 2006