| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,435,096 – 20,435,198 |
| Length | 102 |
| Max. P | 0.964580 |
| Location | 20,435,096 – 20,435,198 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 73.83 |
| Mean single sequence MFE | -22.84 |
| Consensus MFE | -7.98 |
| Energy contribution | -8.64 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.35 |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.964580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20435096 102 + 27905053 AUAUGUGCAUGAUUGAUGUGUGUAAACUAUU---------CGUUGGAAUUGAAUUGAAUGAAAGCGACGCAGAAGCAGUCCAUAUAUACUACAUACAUACAUAU-AUUUCUC (((((((.(((..((..(((((((.....((---------((((.((......)).)))))).(.(((((....)).)))).)))))))..))..))).)))))-))..... ( -20.80) >DroSec_CAF1 17646 98 + 1 AUAUGUGCAUGAUUGAUGUGAGUAAACUAUU---------CGAUGGAAUUGAAUUGAAUGAAAGCGGCGCAGGAGCUGUGCAUAUAC---AUAUAUGUACAUAU-AUUUCU- (((((((((((..(((((((.......((((---------((((........))))))))...(((((......))))).))))).)---)..)))))))))))-......- ( -28.10) >DroSim_CAF1 17325 98 + 1 AUAUGUGCAUGAUUGAUGUGAGUAAACUAUU---------CGAUGGAAUUGAAUUGAAUGAAAGCGGCGCAGAAGCUGUGCAUAUAC---AUAUAUGUACAUAU-AUUUCU- (((((((((((..(((((((.......((((---------((((........))))))))...(((((......))))).))))).)---)..)))))))))))-......- ( -28.10) >DroEre_CAF1 17288 80 + 1 UUAUGUGCAUGAUUGAUGCGUGUAAACUAUU---------CAAUGGAAUCAAAUUGAAUGAAAGC-----------AGUCUGUAUAU---------GUUCAUGUUAUUU--- .((((((((.(((((....((....))((((---------((((........))))))))....)-----------)))))))))))---------)............--- ( -17.10) >DroYak_CAF1 18318 95 + 1 UUAUGUGCAUGAUUGAUGUGUGUAAAACAUUUAAUGGAAUCAAUGGAAUCAAAUUGAAUGAAAGCGGCGCAGAAGCCGUCUGUAUUU---------GU--AUG---UUU--- (((((..(((.....)))..)))))..((((((((.((.((....)).))..))))))))...(((((......)))))........---------..--...---...--- ( -20.10) >consensus AUAUGUGCAUGAUUGAUGUGUGUAAACUAUU_________CGAUGGAAUUGAAUUGAAUGAAAGCGGCGCAGAAGCAGUCCAUAUAU___A_AUA_GUACAUAU_AUUUCU_ .(((((((................................((((........)))).(((...(((((......))))).))).............)))))))......... ( -7.98 = -8.64 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:33 2006