Locus 7623

Sequence ID 3R_DroMel_CAF1
Location 20,426,992 – 20,427,089
Length 97
Max. P 0.880307
window12304

overview

Window 4

Location 20,426,992 – 20,427,089
Length 97
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.70
Mean single sequence MFE -23.98
Consensus MFE -18.80
Energy contribution -18.56
Covariance contribution -0.24
Combinations/Pair 1.05
Mean z-score -1.98
Structure conservation index 0.78
SVM decision value 0.91
SVM RNA-class probability 0.880307
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20426992 97 - 27905053
ACGG-CGCAG---ACAACGAGGCGCGCAAAAUAAAUAUUAUGCCAAAGUAAGCAUUUAUUAUUUGUUUAAUGAUAGCGCCACGAAUUGCUCUCUUCCGCCC
..((-((.((---((((((.(((((.(((((((((((..((((........))))....)))))))))..))...))))).))..))).)))....)))). ( -28.50)
>DroSec_CAF1 9990 97 - 1
ACGG-CGCAG---ACAACGAGGCGCGCAAAAUAAAUAUUAUGCCAAAGUAAGCAUUUAUUAUUUGUUUAAUGAUAGCGCCACGAAUUGCUCUCUUCCGCCC
..((-((.((---((((((.(((((.(((((((((((..((((........))))....)))))))))..))...))))).))..))).)))....)))). ( -28.50)
>DroSim_CAF1 9566 100 - 1
ACGG-CGCACGCCACAACGAGGCGCGCAAAAUAAAUAUUAUGCCAAAGUAAGCAUUUAUUAUUUGUUUAAUGAUAGCGCCACGAAUUGCUCUCUUCCGCCC
..((-(((.((((.......)))).)).(((((((((..((((........))))....)))))))))...((.((((........)))).))....))). ( -26.60)
>DroEre_CAF1 9466 96 - 1
ACGGCCCCAG---ACAACGAGGCGCACAAAAUAAAUAUUAUGCCAAAGUAAGCGUUUAUUAUUUGUUUAAUGAUAGCGCCAGAAAUUGCUCUCUUUCCC--
..((....((---((((...(((((.(((((((((((..((((........))))....)))))))))..))...))))).....))).)))....)).-- ( -18.40)
>DroYak_CAF1 10005 97 - 1
ACGU-CCCAG---ACAACGAGGCGCACAAAAUAAAUAUUAUGCCAAAGUAAGCGUUUAUUAUUUGUUUAAUGAUAGCGCCAGAAAUUGCUCUCUUCCCCCC
..((-(...)---)).....(((((.(((((((((((..((((........))))....)))))))))..))...)))))..................... ( -17.90)
>consensus
ACGG_CGCAG___ACAACGAGGCGCGCAAAAUAAAUAUUAUGCCAAAGUAAGCAUUUAUUAUUUGUUUAAUGAUAGCGCCACGAAUUGCUCUCUUCCGCCC
....................(((((.(((((((((((..((((........))))....)))))))))..))...)))))..................... (-18.80 = -18.56 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:29 2006