| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,423,945 – 20,424,054 |
| Length | 109 |
| Max. P | 0.572519 |
| Location | 20,423,945 – 20,424,054 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.28 |
| Mean single sequence MFE | -13.98 |
| Consensus MFE | -13.82 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20423945 109 + 27905053 UGGCGAAACUCGAGCGCGUAGAGUUCAUAAAAUAUUAUUUUAUUAACCCAUUUUCCACGCUAUUAUUAUUGCCAGU----CCAAUACCAACCACCCCCCCCCACC-CCUACAUC------ ((((((......((((.(.((((((.(((((((...))))))).)))....))).).)))).......))))))..----.........................-........------ ( -14.62) >DroSec_CAF1 7012 103 + 1 UGGCGAAACUCGAGCGCGUAGAGUCCAUAAAAUAUUAUUUUAUUAACCCAUUUUCCACGCUAUUAUUAUUGCCAGU----CCAAUACC-------CCCCACCACCACCUACACC------ ((((((......((((.(.(((((......((((......)))).....))))).).)))).......))))))..----........-------...................------ ( -13.82) >DroSim_CAF1 6573 103 + 1 UGGCGAAACUCGAGCGCGUAGAGUCCAUAAAAUAUUAUUUUAUUAACCCAUUUUCCACGCUAUUAUUAUUGCCAGU----CCAAUACC-------CCCCACCACCAACUACACC------ ((((((......((((.(.(((((......((((......)))).....))))).).)))).......))))))..----........-------...................------ ( -13.82) >DroEre_CAF1 6536 102 + 1 UGGCGAAACUCGAGCGCGUAGAGUCCAUAAAAUAUUAUUUUAUUAACCCAUUUUCCACGCUAUUAUUAUUGCCAGUACCCCCAUC----------C--CACGCCCACCUACACC------ ((((((......((((.(.(((((......((((......)))).....))))).).)))).......))))))...........----------.--................------ ( -13.82) >DroYak_CAF1 6897 111 + 1 UGGCGAAACUCGAGCGCGUAGAGUCCAUAAAAUAUUAUUUUAUUAACCCAUUUUCCACGCUAUUAUUAUUGCCAGUACCCCCAGCACC-------C--ACCACCCACCUACACCCCCAAC ((((((......((((.(.(((((......((((......)))).....))))).).)))).......))))))..............-------.--...................... ( -13.82) >consensus UGGCGAAACUCGAGCGCGUAGAGUCCAUAAAAUAUUAUUUUAUUAACCCAUUUUCCACGCUAUUAUUAUUGCCAGU____CCAAUACC_______CCCCACCACCACCUACACC______ ((((((......((((.(.(((((......((((......)))).....))))).).)))).......)))))).............................................. (-13.82 = -13.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:20 2006