| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,423,438 – 20,423,528 |
| Length | 90 |
| Max. P | 0.525996 |
| Location | 20,423,438 – 20,423,528 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 85.63 |
| Mean single sequence MFE | -20.20 |
| Consensus MFE | -13.62 |
| Energy contribution | -14.88 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.525996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20423438 90 + 27905053 ACUCAUACCACCACCACAUUUAUACCAUUCCCUGCUGCAUGAUGGGUUC-CCGUAUCGGUUUUACGGGCCUGUCAAAGCCACAAGCCCUAA .................................(((...(((((((..(-(((((.......))))))))))))).)))............ ( -19.20) >DroSec_CAF1 6512 83 + 1 UCUCAUACCA-------AUCCAUGCCAUUCCCUGCUGCAUGAUGGGUUC-CCGUAUCGGUUUUACGGGCCUGUCAAAGCCACAAGACCUAA ..........-------................(((...(((((((..(-(((((.......))))))))))))).)))............ ( -19.20) >DroSim_CAF1 6075 83 + 1 CCUCAUACCA-------AUCCAUGCCAUUCCCUGCUGCAUGAUGGGUUC-CCGUAUCGGUUUUACGGGCCUGUCAAAGCCACAAGCCCUAA ......(((.-------...(((((...........)))))((((....-))))...))).....((((.(((.......))).))))... ( -19.90) >DroYak_CAF1 6284 81 + 1 CCUCAUACCA-------UCUCGUGGCAGUCCAUCCUGCAC---GGGUUCCCCGUAUCGGUUUUACGGGCCUGUCAAAGCCACAAGCCCUAA ......(((.-------.......((((......))))((---(((...)))))...))).....((((.(((.......))).))))... ( -22.50) >consensus CCUCAUACCA_______AUCCAUGCCAUUCCCUGCUGCAUGAUGGGUUC_CCGUAUCGGUUUUACGGGCCUGUCAAAGCCACAAGCCCUAA .................................(((...((((((((...(((((.......))))))))))))).)))............ (-13.62 = -14.88 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:19 2006