| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,420,825 – 20,420,916 |
| Length | 91 |
| Max. P | 0.541002 |
| Location | 20,420,825 – 20,420,916 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.19 |
| Mean single sequence MFE | -17.63 |
| Consensus MFE | -10.56 |
| Energy contribution | -11.25 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.541002 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20420825 91 + 27905053 ---CAGUCGUAUUAAUUGCCGGACAAAUCUCUC-AUUAGGCCGCCAGGCAAUUACCUCGACUU------UACGACACCCA---------UAUAGCGCAUAUAGCACACAU ---.(((((...((((((((((.....(((...-...)))...)).))))))))...))))).------...........---------....((.......))...... ( -18.80) >DroSec_CAF1 4056 91 + 1 ---CAGUCGUAUUAAUUGCCGGACAAAUCUCUC-AUUAGGCCGCCAGGCAAUUACCUCGACUU------UACGACACCCA---------UAUGCGCUAUAUAGCAAACAU ---.(((((...((((((((((.....(((...-...)))...)).))))))))...))))).------...........---------..(((........)))..... ( -19.90) >DroSim_CAF1 3634 91 + 1 ---CAGUCGUAUUAAUUGCCGGACAAAUCUCUC-AUUAGGCCGCCAGGCAAUUACCUCGACUU------UACGACACCCA---------UAUGCGCUACAUAGCACACAU ---.(((((...((((((((((.....(((...-...)))...)).))))))))...))))).------...........---------..((.(((....))).))... ( -20.40) >DroEre_CAF1 3573 98 + 1 ---CAGUCGAAUUAAUUGCCGGACAAAUCUCUC-AUUAGGCCGCCAGGCAAUUACCUCGGGUU------UACAACCUUACACCA-UACAUCUGUAUCAUAUAUCU-AUAU ---(((.(((..((((((((((.....(((...-...)))...)).))))))))..)))(((.------((......)).))).-.....)))............-.... ( -16.60) >DroYak_CAF1 3686 100 + 1 ---CAGUCGUAUUAAUUGCCGGACAAAUCUCUC-AUUAGGCCGCAAGGCAAUUACCUCGGCUU------UACAACACCCAACCAGCACAUAUAGCACAUAUAGCUCAUAU ---..((.(((......((((((........))-.....(((....)))........))))..------))).)).............(((((((.......))).)))) ( -17.40) >DroPer_CAF1 6813 99 + 1 CCAUUGUCAAAUUAAUUGUCGAGCGAGAAACUCAAUUAGGCCGAACGGCAAUUAGCCCACGUUUACUCUUACAACACCCC---------AAAAG--UACACCCCACGCAU ............(((((((((..((.(...((.....)).)))..)))))))))((....((.((((.............---------...))--)).)).....)).. ( -12.69) >consensus ___CAGUCGUAUUAAUUGCCGGACAAAUCUCUC_AUUAGGCCGCCAGGCAAUUACCUCGACUU______UACAACACCCA_________UAUAGCCCAUAUAGCACACAU ....(((((...((((((((..........................))))))))...)))))................................................ (-10.56 = -11.25 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:18 2006