Locus 7615

Sequence ID 3R_DroMel_CAF1
Location 20,418,108 – 20,418,207
Length 99
Max. P 0.606997
window12288

overview

Window 8

Location 20,418,108 – 20,418,207
Length 99
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 85.63
Mean single sequence MFE -28.28
Consensus MFE -20.84
Energy contribution -21.08
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.66
Structure conservation index 0.74
SVM decision value 0.15
SVM RNA-class probability 0.606997
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20418108 99 + 27905053
----CUAUCUGUGUGUAGAAUGGGCACAACUUGCUUGUACUCU---ACUCUGACAUGCCUUUGUUCCGCCCCAGGAUCUCUGGGCACCCAGAAUUCCCUGCUCCCU-
----..........((((...((((((((...((.(((.(...---.....)))).))..))))...))))..(((..(((((....)))))..))))))).....- ( -26.90)
>DroSec_CAF1 1572 104 + 1
UACACUAUCUGUGUGUAGAAUGGGCACAACUUGCUUGUACUCU---GCUCUGACAUGCCUUUGUUCCGCCCCAGGAUCUCUGGGCACCCAGGAUUCCCUGCUCCCCG
.((((.....))))((((...((((((((...((.(((.(...---.....)))).))..))))...))))..(((((.((((....))))))))).))))...... ( -29.40)
>DroSim_CAF1 1110 104 + 1
UACACUAUCUGUGUGUAGAAUGGGCACAACUUGCUUGUACUCU---GCUCUGACAUGCCUUUGUUCCGCCCCAGGAUCUCUGGGCACCCAGGAUUCCCUGCUCCCCG
.((((.....))))((((...((((((((...((.(((.(...---.....)))).))..))))...))))..(((((.((((....))))))))).))))...... ( -29.40)
>DroEre_CAF1 1084 94 + 1
----C----UAUCUGUAGAAUGGGCAAAACUU----GUACUCUUGUACUCUGACAUGCCUUUGUUCCGCC-CAGGAUCUCUGGGCUCCCAGGGUUCCCUGCUUCCUG
----.----.....((((..(((((.......----((((....))))...((((......))))..)))-))(((.((((((....)))))).)))))))...... ( -32.20)
>DroYak_CAF1 1110 102 + 1
-ACACUAUCUGUCUGUAGUAUGGGCACAACUU----GUACUCUUGUACUCUGACAUGCCUUUGUUCCGCCCCAGGAUCUCUGGGCUCCAAGGACUCCCUGCUCCCAA
-..(((((......))))).((((..((....----((((....))))(((.....((((..(.(((......))).)...)))).....))).....))..)))). ( -23.50)
>consensus
_ACACUAUCUGUGUGUAGAAUGGGCACAACUUGCUUGUACUCU___ACUCUGACAUGCCUUUGUUCCGCCCCAGGAUCUCUGGGCACCCAGGAUUCCCUGCUCCCCG
..............((((...((((...((......)).............((((......))))..))))..(((..(((((....)))))..)))))))...... (-20.84 = -21.08 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:14 2006