Locus 7614

Sequence ID 3R_DroMel_CAF1
Location 20,417,441 – 20,417,561
Length 120
Max. P 0.728510
window12287

overview

Window 7

Location 20,417,441 – 20,417,561
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.09
Mean single sequence MFE -24.10
Consensus MFE -18.06
Energy contribution -18.30
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.75
SVM decision value 0.42
SVM RNA-class probability 0.728510
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20417441 120 - 27905053
CCAACCGCCCAGCCGACCGAUGUCAAAGUUUUCAUUUCAUAGAUUUCAGUGACAUUUCCUAUUAAUAGAAGGAAAUAUUCAUUUCCUAUUUAUAGAACUGCACAUCUAUGACGUUUCGCA
...........((.((..(((((((.((....((.(((((((((...(((((.(((((((.........)))))))..)))))....)))))).))).)).....)).))))))))))). ( -23.10)
>DroSec_CAF1 899 120 - 1
CCAACCGCCCAGCCGACCGAUGUCAAAGUUUUCAUUUCAUAGAUUUCAGUGACAUUUCCUAUUAAUAGAAGGAAAUAUUCAUUUCCUAUUUAUAGAACUGCACAGCUAUGACGUUUCGCA
...........((.((..(((((((.((((..((.(((((((((...(((((.(((((((.........)))))))..)))))....)))))).))).))...)))).))))))))))). ( -25.40)
>DroSim_CAF1 450 120 - 1
CCAACCGCCCAGCCGACCGAUGUCAAAGUUUUCAUUUCAUAGAUUUCAGUGACAUUUCCUAUUAAUAGAAGGAAAUAUUCAUUUCCUAUUUAUAGAACUGCACAGCUAUGACGUUUCGCA
...........((.((..(((((((.((((..((.(((((((((...(((((.(((((((.........)))))))..)))))....)))))).))).))...)))).))))))))))). ( -25.40)
>DroEre_CAF1 452 110 - 1
-----CGCCCAACCGACCGAUGUCAAAGUUUU-----CAUAGAUUCCAGUGACAUUUCCUAUUAAUAGAAGGAAAUAUUCAUUUCCUAUUUAUAGAACUGCACAGCUAUGACGUCCUGGA
-----.......(((...(((((((.((((((-----.((((((...(((((.(((((((.........)))))))..)))))....))))))))))))((...))..))))))).))). ( -24.40)
>DroYak_CAF1 458 110 - 1
-----CGCCCAACGUACCGAUGUCAAAGUUUU-----CAUAGAUUUCACUGACAUUUCCUAUUAAUAGAAGGAAAUAUUCAUUUCCUAUUUAUAGAACUGCACAGCUAUGACGUUCUGCA
-----.((..(((((.....(((...((((((-----.((((((.....(((.(((((((.........)))))))..)))......))))))))))))..)))......)))))..)). ( -22.20)
>consensus
CCAACCGCCCAGCCGACCGAUGUCAAAGUUUUCAUUUCAUAGAUUUCAGUGACAUUUCCUAUUAAUAGAAGGAAAUAUUCAUUUCCUAUUUAUAGAACUGCACAGCUAUGACGUUUCGCA
..................(((((((.((((...........(....).(((.((.(((.(((.(((...(((((((....)))))))))).)))))).))))))))).)))))))..... (-18.06 = -18.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:14 2006