Locus 7612

Sequence ID 3R_DroMel_CAF1
Location 20,414,362 – 20,414,480
Length 118
Max. P 0.998969
window12283

overview

Window 3

Location 20,414,362 – 20,414,480
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.17
Mean single sequence MFE -23.02
Consensus MFE -21.90
Energy contribution -21.66
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.95
SVM decision value 3.31
SVM RNA-class probability 0.998969
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 20414362 118 + 27905053
--UUUAAAUUGCAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCCUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCUACUACAUGAACACA
--...........((.((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))......)))).)).)) ( -22.80)
>DroSec_CAF1 36629 115 + 1
--CUUAAAUUGCAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCUUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCU---ACAUGAACACA
--...........((.((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))..---.)))).)).)) ( -24.80)
>DroSim_CAF1 40169 115 + 1
--CUUAAAUUGCAUACGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCCUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCU---ACAUGAACACA
--..............((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))..---.)))).))... ( -24.50)
>DroEre_CAF1 36267 114 + 1
UACUUAAAUUGCAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCGGCCAAAGACACAGAAUAGAAACUAAUUCGGAA-AUUUUCUUGCCU---ACAUGAACA--
................((.((((.(((..(((((((.((..........((((((............))))))((((........))))))..-))))))))))..---.)))).)).-- ( -21.50)
>DroYak_CAF1 40715 112 + 1
--CUUAAAUUGCAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCGGCCAAAGACACAGAAUAGAAACUAAUUCGGAA-AUUUUCUUGCCU---ACAUGAACA--
--..............((.((((.(((..(((((((.((..........((((((............))))))((((........))))))..-))))))))))..---.)))).)).-- ( -21.50)
>consensus
__CUUAAAUUGCAUGCGUACAUGAGCACCGGAAAAUGCCAAAAAUUUAAUGUGUCAUUCCAGCCUAAGACACAGAAUAGAAACUAAUUCGGAAAAUUUUCCUGCCU___ACAUGAACACA
................((.((((.(((..(((((((.((..........((((((............))))))((((........))))))...))))))))))......)))).))... (-21.90 = -21.66 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:50:10 2006