Locus 761

Sequence ID 3R_DroMel_CAF1
Location 2,669,302 – 2,669,416
Length 114
Max. P 0.500000
window1216

overview

Window 6

Location 2,669,302 – 2,669,416
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 96.09
Mean single sequence MFE -28.58
Consensus MFE -25.41
Energy contribution -25.47
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.14
Structure conservation index 0.89
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2669302 114 - 27905053
CGGCGUUUUAAUUUAAGCCCAAGUUGAGAGCUCCUUUCAUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCUCU-AAAAAGGGCAGG-----
................((((...(((((.(((.......((((((......))))))((((......))))...(((((((.....)))))))..)))))).-))...))))...----- ( -27.20)
>DroSec_CAF1 28786 114 - 1
CGGCGUUUUAAUUUAAGCCCAAGUUGAGAGCUCCUUUCAUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCUCU-AAAAAGGGCAGG-----
................((((...(((((.(((.......((((((......))))))((((......))))...(((((((.....)))))))..)))))).-))...))))...----- ( -27.20)
>DroSim_CAF1 21859 114 - 1
CGGCGUUUUAAUUUAAGCCCAAGUUGAGAGCUCCUUUCAUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCUCU-AAAAAGGGCAGG-----
................((((...(((((.(((.......((((((......))))))((((......))))...(((((((.....)))))))..)))))).-))...))))...----- ( -27.20)
>DroEre_CAF1 21834 114 - 1
CGGCGUUUUAAUUUAAGCCCAAGUUGAGAGCUCCUUUCAUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCUCA-AAAAAGGGCAGG-----
................((((...(((((.(((.......((((((......))))))((((......))))...(((((((.....)))))))..)))))))-)....))))...----- ( -30.30)
>DroYak_CAF1 29008 114 - 1
CGGCAUUUUAAUUUAAGCCCAAGUUGAGAGCUCCUUUCAUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCUCU-AAAAAGGACAGG-----
.((((.((((......((((....((((((...))))))((((((......)))))))))))))).))))..(((((((((.....)))))).....(((..-....))).))).----- ( -26.20)
>DroAna_CAF1 16794 120 - 1
CGGCGUUUUAAUUUAAGCCCGAGUUGAGAGCUCCUUUCGUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCACACAAAAAGGGCAAGCGCGG
..((((((........((((((((.....)))).....((.((((............((((......))))...(((((((.....)))))))...)))).)).....)))))))))).. ( -33.40)
>consensus
CGGCGUUUUAAUUUAAGCCCAAGUUGAGAGCUCCUUUCAUUUGGCCAACAUGCUAAAGGGUUAAAUUGCCCACUGAAUCAAAAUUAUUGGUUUCAAGCCUCU_AAAAAGGGCAGG_____
.((((.((((......((((....((((((...))))))((((((......)))))))))))))).))))....(((((((.....)))))))...((((........))))........ (-25.41 = -25.47 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:29 2006