| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,400,534 – 20,400,630 |
| Length | 96 |
| Max. P | 0.506126 |
| Location | 20,400,534 – 20,400,630 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.83 |
| Mean single sequence MFE | -20.75 |
| Consensus MFE | -13.05 |
| Energy contribution | -13.24 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20400534 96 - 27905053 C-A-AAAUCUAAUUAAUUAAUAAGGGAUUAUUUAUGCCUUGGCGUGCUUCCGAAUU-GGUCAAAAUUC-ACAGCGAACGGAAAACUCGCGCCUAUGCAUA .-.-.(((((.(((....)))...)))))...(((((...((((((.(((((((((-......)))))-...(....)))))....))))))...))))) ( -20.90) >DroSec_CAF1 23139 96 - 1 U-A-AAAUCUAAUUAAUUAAUAGGGGAUUAUUUAUGCCUUGGCGUGCUUCCGAAUU-GGUAAAAACUC-ACAGCAAACGGAAAACUCGCGCCUAUGCAUA .-.-.(((((..(........)..)))))...(((((...((((((.(((((....-.((........-))......)))))....))))))...))))) ( -20.90) >DroSim_CAF1 26147 97 - 1 C-A-AAAUCUAAUUAAUUAAUAGGGGAUUAUUUAUGCCUUGGCGUGCUUCCGAAUUCGGGAAAAACUC-ACAGCAAACGGAAAACUGGCGCCUAUGCAUA .-.-.(((((..(........)..)))))...(((((...(((((..(((((....))))).......-........(((....))))))))...))))) ( -21.80) >DroEre_CAF1 22579 97 - 1 CUA-AAACCUAAUUAAUUAAUUAGGGAUUAUUUAUGCAUUGGCGUGCUUCCGAAUU-UGGAAAAACUC-ACAGCAAACGGAAAACUCGUUCCUAUGCAUA .((-(..(((((((....)))))))..)))..(((((((.((..((((...((.((-(....))).))-..))))(((((.....))))))).))))))) ( -22.40) >DroYak_CAF1 26672 99 - 1 CCAAAAACCUAAUUAAUUAAUUAGGGAUUAUUUAUGCCCUGGCGUGCUUCCGAAAU-UGGGAAAACUCUACAGCAAACGGAAAACUCGCGCCUAUGCAUA .......(((((((....))))))).......(((((...((((((.(((((...(-(((((....))).)))....)))))....))))))...))))) ( -27.00) >DroPer_CAF1 61890 91 - 1 C-C-AAA-UUAAUUAAUUAAUA----GAUAUUUAUGCUUUGUCACGCCAUCAAAUU-AGGUAAAAAAC-AAACGGAAUGAAAAGUCCGCGCCUCAGCAUA .-.-...-..............----......((((((..(.(..(((........-.))).......-...((((.(....).)))).).)..)))))) ( -11.50) >consensus C_A_AAAUCUAAUUAAUUAAUAAGGGAUUAUUUAUGCCUUGGCGUGCUUCCGAAUU_GGGAAAAACUC_ACAGCAAACGGAAAACUCGCGCCUAUGCAUA ................................(((((...((((((.(((((.........................)))))....))))))...))))) (-13.05 = -13.24 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:57 2006