| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,391,886 – 20,391,983 |
| Length | 97 |
| Max. P | 0.984659 |
| Location | 20,391,886 – 20,391,983 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.40 |
| Mean single sequence MFE | -17.31 |
| Consensus MFE | -9.65 |
| Energy contribution | -10.21 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.94 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.98 |
| SVM RNA-class probability | 0.984659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20391886 97 - 27905053 CUUGCAAAUAUACCCUCAGAACGCUCCACAACACUUUGAGAUACAUGUGUAAAUAAAUAUAAAUGUA----UGUAUGUACA--UAUAGCGCAAUCAACAAGCA .((((.........((((((..............))))))....(((((((.(((.((((....)))----).))).))))--)))...)))).......... ( -14.84) >DroEre_CAF1 14188 88 - 1 CUUGCAAAUAUACCCUCAGAACGCUC---UACACUUUGAGAUACUUACAUA------------UGUACAUAUAUAUGUAUGUACAUAGCGCAAUCAACAAGCA .((((.........((((((......---.....)))))).........((------------(((((((((....)))))))))))..)))).......... ( -19.40) >DroYak_CAF1 18083 82 - 1 CUUGCAAAUAUACCCUCAGAACGCUC---UACACUUUGAGAUA----CAUA------------UGUACAUAUGUAUGUACA--UAUAGCGCAAUCAACAAGCA .((((.........((((((......---.....))))))...----.(((------------(((((((....)))))))--)))...)))).......... ( -17.70) >consensus CUUGCAAAUAUACCCUCAGAACGCUC___UACACUUUGAGAUAC_U_CAUA____________UGUACAUAUGUAUGUACA__UAUAGCGCAAUCAACAAGCA .((((.........((((((..............)))))).......................(((((((....)))))))........)))).......... ( -9.65 = -10.21 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:54 2006