| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,381,006 – 20,381,118 |
| Length | 112 |
| Max. P | 0.908943 |
| Location | 20,381,006 – 20,381,118 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 92.54 |
| Mean single sequence MFE | -32.60 |
| Consensus MFE | -29.76 |
| Energy contribution | -29.76 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.908943 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20381006 112 - 27905053 AAAAAAAAAA--AGAAUCACAGAUUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGUUGAAAAUAUUCGAG ..........--.(((((...)))))(((.((((((((.......)))))(((.(((((.......))))))))................))).)))..(((((....))))). ( -31.00) >DroSec_CAF1 3957 112 - 1 GCAAAAAAUA--AGAAUCACAGAUUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGUUGAAAACGAUGGAG ..........--.(((((...)))))(((.((((((((.......)))))(((.(((((.......))))))))................))).)))(((((....)))))... ( -32.60) >DroSim_CAF1 6855 114 - 1 GCAAAAAAAAAAGGAAUCACUGAUUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGUUGAAAACGAUGGAG .............(((((...)))))(((.((((((((.......)))))(((.(((((.......))))))))................))).)))(((((....)))))... ( -32.40) >DroEre_CAF1 3965 110 - 1 GGAAAAA--A--AGAAUCAACGAUUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACCUUGAAAACGGUCGAU ((.....--.--.(((((...)))))((((((.(((((.......)))))(((........)))...))))))......))..............((((.(....).))))... ( -33.90) >DroYak_CAF1 6913 110 - 1 GCAAAAA--A--AGAAUCACUGAUUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGUUGAAAGCGCUCGAG .......--.--.(((((...)))))((((((.(((((.......)))))(((........)))...)))))).................(((((..(((.....)))))))). ( -33.10) >consensus GCAAAAAA_A__AGAAUCACAGAUUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGUUGAAAACGAUCGAG .............(((((...)))))(((.((((((((.......)))))(((.(((((.......))))))))................))).)))................. (-29.76 = -29.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:51 2006