| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 20,378,284 – 20,378,404 |
| Length | 120 |
| Max. P | 0.729918 |
| Location | 20,378,284 – 20,378,404 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.22 |
| Mean single sequence MFE | -29.59 |
| Consensus MFE | -22.74 |
| Energy contribution | -22.47 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 20378284 120 - 27905053 GCAGGAAUCAGCCAAGGAAUACGUACCUCACACCAAUAGUCCCACUUGGGAUUCACAUUGUUAUCAAUGAUCUGGGUCUUGAACUCCUGGGCGCCCACAUUGAUGAUGGCAUAGGGAUCC ...(((.((.(((((((........))).....((((((((((....))))))...))))(((((((((...((((((((........))).))))))))))))))))))....)).))) ( -31.90) >DroVir_CAF1 1567 114 - 1 ----AUAGCAGCC--AGCCUACGUACCUCACACCAAUAAUCCCAUUUGGGAUUCACAUUAUUAUCAAUGAUCUGCGUCCUGAACUCCUGUGCGCCCACAUUGAUAAUGGCGUACGGAUCC ----.........--..(((((((.............((((((....)))))).....(((((((((((....(((..(.........)..)))...)))))))))))))))).)).... ( -29.40) >DroGri_CAF1 20582 114 - 1 ----AUAGCAGCG--AGCAUACGCACCUCGCACCAAUAAUCCCACUUGGGAUUCACAUUGUUAUCGAUGAUCUGCGUCCGGAAUUCUUGAGAGCCCACAUUGAUAAUCGCAUACGGAUCG ----...((.(((--((.........)))))..((((((((((....))))))...))))(((((((((....((.((.((....)).))..))...)))))))))..)).......... ( -27.70) >DroWil_CAF1 1181 118 - 1 -ACAAAUACUUUCG-AAUGAACUCACCUCGCACCAGUAAUCCCAUUUGGGAUUCACAUUAUUAUCAAUAAUUUGUGUUUUAAACUCUUGAGCUCCCACAUUGAUAAUGGCAUAGGGAUCC -.............-.......((.(((.((....((((((((....)))))).))..((((((((((.......((((.........))))......))))))))))))..)))))... ( -21.72) >DroMoj_CAF1 19504 114 - 1 ----AUAGCAGCC--AGCUUACGUACCUCACACCAGUAGUCCCACUUGGGAUUCACAUUAUUAUCAAUGAUCUGCGUCCUGAACUCCUGGGCGCCCACAUUGACGAUGGCAUACGGAUCC ----..(((....--.)))..((((..........((((((((....)))))).)).((((..((((((....((((((.........))))))...))))))..))))..))))..... ( -31.20) >DroAna_CAF1 2614 120 - 1 GAAAGAAUCGUUCCAGAAAUACGUACCUCGCACCAGUAGUCCCACUUGGGAUUCACGUUGUUGUCAAUGGUCUGAGUUCUGAACUCUUGAGCUCCCACAUUGAUGAUGGCAUAGGGAUCC .........(((((.....................((((((((....)))))).))((..(..((((((....((((((.........))))))...))))))..)..))...))))).. ( -35.60) >consensus ____AAAGCAGCC__AGCAUACGUACCUCACACCAAUAAUCCCACUUGGGAUUCACAUUAUUAUCAAUGAUCUGCGUCCUGAACUCCUGAGCGCCCACAUUGAUAAUGGCAUACGGAUCC ................................((...((((((....))))))....((((((((((((....((((((.........))))))...)))))))))))).....)).... (-22.74 = -22.47 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:49:50 2006